Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0110 ATGGAGATTGGTCCAAAGACCGTTGTCAGGTTTCTTAAACATGCCTCCAGATCCAAAGAAATCCTTCAGGTATTTGATATGTGGAGGAAAATTGAGGAATCACGGATTAATGAATTCAACTACGACAAAATAATACGTGCGCTGACTGAAGAAGGAATGATGGAAGAGGCAATGGCTGCACTGCTGGAGATGAAAAATCATGATCTCAAACCTTTAGGTGCGTACAGTCCAATAATTTACGGTTTCTCCATGGAAGGCAAATTTAGTGATGCTTTGTTTTTTCTAAGTGAGATGAAAGCATCCAGTGTATTGCCGGACACTGAAACCTATGATAGTTTAATACAGGGCTATGGGAAGTTTAAGATGTATGATGATATCGGCTTGTGTGTGAAAAAGATGGAGTTGGATGGATGTTCTCCTAGTCACACAACTTATAAAAGAGAATATTCTAAAGGTGGACTACTTCAGAGAATGGAATCAGTATATCAAAGAATGCTTTCCAAAAAAATGCATTTGCATTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTTGGGATGGTTACAAAGATGGAAAATTTTTATCGAAAACTTTTGAACTCAGAAACCCCTTTACAGGATGATTTAATAAGAAAACTTGCAGGAGTTTATATTGAGAATTATATTTATTCTAGATTAGAAGGTTTGGGGATTGCTTTAGGTTCGACTTTTGGTGGGACTGAACTTGTTTGGTCTCTGCGCCTCCTTTCTTATGATTGTCTTTTGAGTCGAAAAGGCATGGATATCGTCGTTGGAGAAATGCAAGAAGCCAAAGTTCAATGGAATGTTGCACTTGCTAATGTTATCATGCTGTCTTATGTGAAGGGGAATGATTTCAAGCACTTGAGAATGTTTCTTTCTCAATTGTCAACCTATGGAGTGAAGCCTGACATAGTCACTATTGGAATTATTTTTTATGCAACTAGAAAGGGTTTTGATGGCAGTGGAACTTTGGAAAAATAG 1008 0.377 MEIGPKTVVRFLKHASRSKEILQVFDMWRKIEESRINEFNYDKIIRALTEEGMMEEAMAALLEMKNHDLKPLGAYSPIIYGFSMEGKFSDALFFLSEMKASSVLPDTETYDSLIQGYGKFKMYDDIGLCVKKMELDGCSPSHTTYKREYSKGGLLQRMESVYQRMLSKKMHLHSSTLVAMLEAYARFGMVTKMENFYRKLLNSETPLQDDLIRKLAGVYIENYIYSRLEGLGIALGSTFGGTELVWSLRLLSYDCLLSRKGMDIVVGEMQEAKVQWNVALANVIMLSYVKGNDFKHLRMFLSQLSTYGVKPDIVTIGIIFYATRKGFDGSGTLEK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0110 335 Pfam Pentatricopeptide repeat domain 95 145 IPR002885 -
Lele22g0110 335 Gene3D Tetratricopeptide repeat domain 148 229 IPR011990 GO:0005515
Lele22g0110 335 Gene3D Tetratricopeptide repeat domain 2 147 IPR011990 GO:0005515
Lele22g0110 335 Pfam PPR repeat 177 201 IPR002885 -
Lele22g0110 335 Pfam PPR repeat 44 67 IPR002885 -
Lele22g0110 335 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 106 140 IPR002885 -
Lele22g0110 335 PANTHER OS08G0520200 PROTEIN 7 334 - -
Lele22g0110 335 TIGRFAM PPR: pentatricopeptide repeat domain 109 141 IPR002885 -
Lele22g0110 335 TIGRFAM PPR: pentatricopeptide repeat domain 41 71 IPR002885 -
Lele22g0110 335 TIGRFAM PPR: pentatricopeptide repeat domain 75 107 IPR002885 -
Lele22g0110 335 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0110 Lele-ChrLele22 631382 632631 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0110 37 202 Glycosyltransferase AT1G05670 23.529 3.75e-06 46.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0110 22 631382 632631 Lele23g1947 23 22485935 22487700 hybridization
Lele22g0110 22 631382 632631 Lele24g0098 24 640028 642850 hybridization