Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0103 ATGGCGAATCTGGTTAGTCCGATTCCCATTCAGCATCTACCCTTCAAGCGCGGCACAATAGTGAAACCTTGCAATCCCCTCTTCCTTAATCCCTTCCCTAAATTCCCTTATCTACTCACTCAAATCCGTCTGTACCCTGTTCGTATCTCACCAACTGATACATTTTCACAAACTGCTTCCCTACAGCACAAAACCCTCCTTGTTGAGACTTACCATGAGCATCGCATCCTCAAATCCTTATTGCGAAAGCTCCAGAGGCAAGATTCAAGCCCTCTCCACATACTCGAACAAGATGGAGATTGGTCCAAAGACCAGTTCTGGTCCGTCGTTAGGTTTCTTAAACATGCCTCCAGATCCAAAGAAATCCTTCAGGTATTTGATATGTGGAAAAAAATTGAGGAATCACGTATTAATGAATGCAACTACGACAAAATAATTCGTGTGCTGACTGAAGAAGAAATGATGGAAGAGGCAGTGGCTGCACTGCAGGAGATGAACAATCATGGTCTCAAACCTTCTTTAGGTGCGTACAATCCAATAATTCATGGTTTCTCCATGGAAGGCAAATTCAGTGATGCTTTGTTTTTTCTAAGTGAGATGAAAGTATCCAATGTGTTACCGGACACTGAAACCTATGATAGTTTGATTCAGGGCTATGGGAAGTTTAGGATGTATGATGAGATGGACTTGTGTGTGAAAAAGATGGAGTTGGATGGATGTTTTCTTGGTCAAACAACTTGTAACATACTTATAAGAGAATATTCTAAAGGTGGACTACTTCAGAGAATGGAATCAGTATATCAAAGAATGCTTTCCAAAAAAATGCATTTGCACTCTTCTACTTTGGTTGCAATGCTTGAGGCTTATGCCAGATTTGGGATAGTTTCAAAGATGGAAAAAGTTTATAGAAAACTTTTGAACTCAGAAATCCCTTTAAAGGATGATTTAATAAGAAAACTTGCAGAAGTTTATATTGAGAACTATATGTATTCTAGATTAGAAGATTTGGGGATTGATTTACATTCGAATTTTGGTGGGACTGCACTTGTTTGGTGTCTGCGCCTACTTTCTTATGCTTGTCTTCTGAGTCGAAAAGGCATGAATATCGTTGTTGGAGAAATGCAAGAAACCAAAGTTCAATGGAATATTACACTTGCTAATATTATAATGCTGGCTTATGTGAAGATGAATGATTTCAAGCACTTGAGAATGTTTCTTTCTCAATTGTCAACCTATGGAGTGAAGCCTGACATAGTCACTATTGGAATTATTTTTGATGCAACTAGAAAGGGTTTTGATGGCAGTGGAGCTTTGGAAAAATGGAGAAGGATGGGCTATCTTCATAGGGTTGTAGAAATGGAAACAGATTCTCTGGTCCTTACTGCGTTTGGGAAAGGTCATTTTCTCAAGACATGTGAAGAAGTGTACTCTTCTCTGCACCCAGAGGACAGAGAAAGAAAAACATGGACTTATGATGGCCTTGTGGATTTGGTATCTGAACATATTTAA 1509 0.391 MANLVSPIPIQHLPFKRGTIVKPCNPLFLNPFPKFPYLLTQIRLYPVRISPTDTFSQTASLQHKTLLVETYHEHRILKSLLRKLQRQDSSPLHILEQDGDWSKDQFWSVVRFLKHASRSKEILQVFDMWKKIEESRINECNYDKIIRVLTEEEMMEEAVAALQEMNNHGLKPSLGAYNPIIHGFSMEGKFSDALFFLSEMKVSNVLPDTETYDSLIQGYGKFRMYDEMDLCVKKMELDGCFLGQTTCNILIREYSKGGLLQRMESVYQRMLSKKMHLHSSTLVAMLEAYARFGIVSKMEKVYRKLLNSEIPLKDDLIRKLAEVYIENYMYSRLEDLGIDLHSNFGGTALVWCLRLLSYACLLSRKGMNIVVGEMQETKVQWNITLANIIMLAYVKMNDFKHLRMFLSQLSTYGVKPDIVTIGIIFDATRKGFDGSGALEKWRRMGYLHRVVEMETDSLVLTAFGKGHFLKTCEEVYSSLHPEDRERKTWTYDGLVDLVSEHI 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0103 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 208 242 IPR002885 -
Lele21g0103 502 Pfam PPR repeat family 176 220 IPR002885 -
Lele21g0103 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 243 277 IPR002885 -
Lele21g0103 502 Gene3D Tetratricopeptide repeat domain 235 337 IPR011990 GO:0005515
Lele21g0103 502 PANTHER OS08G0520200 PROTEIN 56 500 - -
Lele21g0103 502 Pfam PPR repeat 246 273 IPR002885 -
Lele21g0103 502 TIGRFAM PPR: pentatricopeptide repeat domain 246 275 IPR002885 -
Lele21g0103 502 TIGRFAM PPR: pentatricopeptide repeat domain 211 241 IPR002885 -
Lele21g0103 502 TIGRFAM PPR: pentatricopeptide repeat domain 177 209 IPR002885 -
Lele21g0103 502 Gene3D Tetratricopeptide repeat domain 348 501 IPR011990 GO:0005515
Lele21g0103 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 173 207 IPR002885 -
Lele21g0103 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Lele21g0103 502 Gene3D Tetratricopeptide repeat domain 68 234 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0103 Lele-ChrLele21 661852 663629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0103 128 444 Glycosyltransferase AT1G05670 21.101 5.53e-09 57.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0103 21 661852 663629 Lele23g1947 23 22485935 22487700 hybridization
Lele21g0103 21 661852 663629 Lele24g0098 24 640028 642850 hybridization