Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1943 ATGACATGGAACGCGTGGCCCCGCACCAAGGTCGAAGCTAGCAAGTGCGTCATCCCACTTGCTGCCAACATCTCCCTGATCCGTTCTCATCCCGACATTCCACGCCTCCCGTATGCCCCTCTCCGCTGCAAGGCCTGCTCATCCGTTCTTAATCCCTTCTCTCGCGTTGATTTCAATGCTAAGATCTGGATCTGCCCTTTTTGCTATCAAGGCAATCATTTCCCCCCTCCCCCTCATTATAATGCGGTCTCTGAGACCGATGTCCCCGGGGAGCTCTACCCCCAGTACACCACTGTTGAATATGTGCTTCCCCTCTCCTCCAACCCCAATTCACTCGGTAACCCCAATCTCGATCCGGCCCATCAGTTGCTGCCTTCCCCTGTTTTTGTCTTTTTGCTTGACACATGCATGATCGAGGAGGAGATGGAGTTTGTGAAATCCGCACTTAGACAGGCGATCGGTCTGCTACCTGACAATGCTCTCGTCGGTTTCATTTCTTTTGGTACCCAGGTTCAAGTTCATGAATTGGAGTTCTCGGACATGTCCAAGGTTTATGTGTTCCGGGGTAGTAAGGAGATTGCGAAAGAACAGATTTTGGAGCAACTGGGTCTGGGTGCCTGTGGGAGGAGACAGGCCGGCGCATATCAAAAGGGATTGAAGGGTGGATTCCCCCCTTCAGGGGTAACACGGTTTTTACTGCCTGCATCTGATTGTGAATACACTCTTAATTCGCTACTCGATGAATTACAAACCGATCAATGGCCTGTTGCACCAGGCAGTCGTCCAGCTCGGTGCACTGGAGTGGCTTTAAGTGTCGCAGCAGGATTGCTCGGTGCTTGTGTTCCTGGTACTAGGGCTAGAATCATAGCTTTGGTCGGGGGTCCATGCACCGAAGGACCAGGATCGATTGTGTCCAAAGATCTATCTGACCCAGTACGTTCTCATAAAGATCTTGATAAAGACGCTGCACCCTACTTCAAAAAAGCTGTCAAATTCTACGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGGTCATGTTTTAGATCTTTTTGCATCAGCCCTTGATCAGGTTGGGGTTGCAGAAATGAAAGTTGCGGTTGAAAGGACAGGTGGCCTTGTTGTTCTTGCTGAAAGTTTTGGTCATTCTGTTTTCAAGGACTCTTTTAAGCGTGTTTTTGAGGACGGGGAGCAGTCACTTGGTCTTTGTTTCAATGGTACCCTTGAGATCAACTGCTCCAAGGAAATAAAAATTCAAGGAATTATTGGACCTTGCACATCATTGGAAAGGAAAGGGCCTTCGGTTGCTGATACTGTGATAGGAGAGGGGAATACAACAGCATGGAAGATGTGCGGCCTTGACAAGAGTACTTGCTTGACAGTAATGTTTGATCTTTCACCAAGTGATCGTTCAAACAGTCCAGGAACCATCAACCCACAGTTTTACCTACAGTTCCTTACAAGTTTCCAGGGTCCTGATGGTCAATTAGCTCTTTGTGTAACAACAGTAACTAGAAGATGGGTAGATAGTGCTGTTAACTCTGAGGAATTGGTACAAGGATTTGATCAAGAAACAGCTGCAGTTGTAATGGCTAGATACACTTCTCTGAAAATGGAGATGGAGGAAGCATTTGATGCTACACGGTGGTTAGATCGACACCTCATTCGTCTCTGTTCTAAATTTGGGGACTACCGCAAGGATGACCCATCATCATTTACATTAAACCCATCATTTTCATTGTTCCCTCAGTTTATGTTCAATCTGCGACGATCACAGTTTGTACAGGTTTTTAACAATAGTCCAGATGAGACTGCCTACTTCCGCATGCTGTTGAACAGGGAAAAAATTAGTAATGCTGCCGTCATGATTCAGCCATCTTTACTATCATATTCATTTAATTCACTGCCTGCACCTGCATTGTTGGATGTATCTTCCATCGCTGCTGACAGGATTCTGTTGCTAGATTCATATTTTAGTGTCGTCAATTTTCATGGGATGACCATAGCCCAGTGGCGCAACTTAGGATACCAGAACCAACCAGAACATCAGGCATTTGCACAGCTATTACAAGCTCCACGTGATGATGCCCAAATCATCATCAGAGATCGTTTTCCTGTTCCTAGATTGGTAGTTTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAACCCCTCGGCAACATACAACAATGCACACGAGATGGCTGCTGGTTCAGATGTGATCTTCACGGATGATGTGAGCCTTCAAGTCTTCTTTGAGCATCTTCAAAAGCTGGCTGTCCAATCTTGA 2298 0.4652 MTWNAWPRTKVEASKCVIPLAANISLIRSHPDIPRLPYAPLRCKACSSVLNPFSRVDFNAKIWICPFCYQGNHFPPPPHYNAVSETDVPGELYPQYTTVEYVLPLSSNPNSLGNPNLDPAHQLLPSPVFVFLLDTCMIEEEMEFVKSALRQAIGLLPDNALVGFISFGTQVQVHELEFSDMSKVYVFRGSKEIAKEQILEQLGLGACGRRQAGAYQKGLKGGFPPSGVTRFLLPASDCEYTLNSLLDELQTDQWPVAPGSRPARCTGVALSVAAGLLGACVPGTRARIIALVGGPCTEGPGSIVSKDLSDPVRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQGHVLDLFASALDQVGVAEMKVAVERTGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLERKGPSVADTVIGEGNTTAWKMCGLDKSTCLTVMFDLSPSDRSNSPGTINPQFYLQFLTSFQGPDGQLALCVTTVTRRWVDSAVNSEELVQGFDQETAAVVMARYTSLKMEMEEAFDATRWLDRHLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRMLLNREKISNAAVMIQPSLLSYSFNSLPAPALLDVSSIAADRILLLDSYFSVVNFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPRDDAQIIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQKLAVQS 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1943 765 Gene3D Sec23/Sec24 helical domain 518 762 - -
Lele23g1943 765 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 624 764 IPR036180 -
Lele23g1943 765 SUPERFAMILY Zn-finger domain of Sec23/24 31 104 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele23g1943 765 Gene3D von Willebrand factor, type A domain 126 401 IPR036465 -
Lele23g1943 765 FunFam Protein transport protein SEC23 623 727 - -
Lele23g1943 765 Pfam Sec23/Sec24 zinc finger 40 76 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele23g1943 765 FunFam Protein transport protein SEC23 518 638 - -
Lele23g1943 765 Pfam Sec23/Sec24 helical domain 521 617 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lele23g1943 765 Pfam Gelsolin repeat 633 721 IPR007123 -
Lele23g1943 765 Pfam Sec23/Sec24 beta-sandwich domain 403 507 IPR012990 -
Lele23g1943 765 Gene3D Severin 623 727 IPR029006 -
Lele23g1943 765 SUPERFAMILY Helical domain of Sec23/24 521 623 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lele23g1943 765 CDD Sec23_C 613 733 IPR037550 GO:0030127|GO:0090114
Lele23g1943 765 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 1 764 IPR037364 -
Lele23g1943 765 FunFam Protein transport protein SEC23 126 402 - -
Lele23g1943 765 Pfam Sec23/Sec24 trunk domain 126 392 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lele23g1943 765 FunFam Protein transport protein SEC23 37 98 - -
Lele23g1943 765 Gene3D - 37 98 - -
Lele23g1943 765 Gene3D - 1 504 - -
Lele23g1943 765 SUPERFAMILY beta-sandwich domain of Sec23/24 1 520 - -
Lele23g1943 765 SUPERFAMILY vWA-like 127 393 IPR036465 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1943 Lele-ChrLele23 22465748 22471536 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0108 21 687270 692948 Lele23g1943 23 22465748 22471536 hybridization
Lele22g0113 22 644838 651557 Lele23g1943 23 22465748 22471536 hybridization