Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0113 ATGTACAGTAGTACTCCAGTTTGGTGGGTCAACATTCTCTCGGTCAATGGACCCAAGTCTCAAATTTCACTGTTACGATTTGTGCATACTTCATCGCAGAATCAGACAACAATGTCGGAATTGGCGAACACAGACCCCGAAGGCATTGACGGAGTCCGCATGACATGGAACGCGTGGCCCCGCACCAAGGTCGAAGCCAGCAAGTGCGTCATCCCACTTGCTGCCAACATCTCCTTGATCCGTTCTCATCCCGACATTCCACGCCTCCCTTATGCCCCTCTTCGCTGCAAGACCTGCTTGTCCGTTCTCAATCCATTCTCTCGCTTTGATTTCACTGCTAAGATCTGGATCTGCCCTTTTTGCTATCAACGCAATCATTTCCCCCCTCATTATAATGCGATATCTGAGACCAATGTCCCCGGGGAGCTCTACCCCCAGTACACCACTGTTGAATATGTGCTCCCTCTCTCCTCCAACCCCAATTCATTCGGAAACCCCAATCTCGATCCGGCCCATCAGTTGCAGCCTTCCCCTGTTTTTGTCTTCTTGCTTGATACATGCATGATCGAGGAGGAGATGGAGTTTGTGAAATCCGCACTTAGACAGGCGATCGGTCTGCTACCTGACAATGCTCTCGTGGGTTTCATTTCTTTTGGTACCCAGGTTCAAGTTCATGAATTGGGGTTCTCTGACATGTCCAAGGTTTATGTGTTCCGGGGTAGTAAGGAGATTGCGAAAGAACAGATTCTGGAGCAACTGGGTCTGGGTGCCTCTGGGAGGCGACAGGCCGGCGCATATCAAATGGGGTTGAAGGGTGGATTCCCCGCATCAGGTGTAACGCGGTTTTTACTGCCTGCATCTGATTGTGAATACACACTCAATTCGCTACTGGATGAATTGCAAACCGATCAATGGCCTGTTCCACCAGGCAGTCGTCCAGCTCGGTGCACTGGAGTGGCCATAAGTGTCGCGGCAGGATTGCTTGGTGCTTGTGTTCCTGGTACTGGGGCTAGAATCATAGCTTTGGTCGGGGGACCATGCACCGAAGGACCAGGCTCGATTGTGTCCAAAGATCTATCTGACCCAATGCGTTCTCACAAAGATCTTGATAAAGACGCAGCGCCCTACTTCAAAAAAGCTGTCAAATTCTATGAGGGTCTTGCAAAACAGCTGGTTAGCCAGGATCATGTTTTAGATCTTTTTGCATCAGCCCTTGATCAGGTTGGAGTTGCAGAAATGAAAGTTGCAGTTGAAAGGTCCGGTGGCCTTGTTGTTCTTGCTGAAAGTTTTGGTCATTCAGTTTTCAAGGACTCATTTAAGCGTGTTTTTGAGGATGGGGAGCAGTCACTTGGTCTTTGTTTTAATGGAACCCTTGAGATCAACTGCTCGAAGGAAATAAAAATTCAAGGAATTATTGGACCTTGCACATCATTGGAAAAGAAAGGGCCTTCGGTTGCTGATACTGTGATAGGAGAGGGGAATACTAGAGCGTGGAAGATGTGTGGCCTTGACAACAGTACTTGCTTGACAGTGATGTTTGATCTTTCAACAAGTGATCGTTCAAACAATCCAGGAACCATCAACCCACAGTTTTACCTACAGTTCCTTACAAGTTACCAGGGTCCTGATGGTCAATTAGCCCTTCGTGTAACAACAGTGACTAGAAGATGGGTAGATAGTGCTGTTAACTCCGAGGAATTGGTACAAGGATTTGATCAAGAAACAGCTGCAGTTGTAATGGCTAGATACACTTCTCTGAAAATGGAGATGGAGGAAGCATTTGATGCCACACGGTGGTTAGATCGGCACCTCATTCGTCTCTGTTCAAAATTTGGGGACTACCGCAAGGATGACCCATCATCATTTACATTAAACCCATCATTTTCATTGTTCCCTCAGTTTATGTTTAATCTGCGACGATCACAGTTTGTACAGGTTTTTAACAATAGTCCAGATGAGACTGCCTACTTTCGCATTCTGTTGAACAGGGAAAACATTAGTAATGCGGCTGTCATGATTCAGCCATCTTTAATATCATATTCATTCAATTCACTGCCTGCACCTGCGTTGTTGGATGTATCTTCCATTGCTGCTGACAGGATTCTGCTGCTAGATTCATATTTTAGTGTCGTCATTTTTCATGGGATGACCATAGCTCAGTGGCGCAACTTAGGATACCAGAATCAACCAGAACATCAGGCATTTGCACAACTGTTACAAGCTCCACGTGAAGATGCTCAAATCATCATCAGAGATCGTTTTCCTGTTCCTAGATTGGTAGTTTGTGATCAACATGGTTCCCAGGCTAGATTTTTATTAGCAAAGCTGAACCCCTCGGCAACATACAACAATGCACACGAGATGGCTGCTGGTTCAGATGTGATCTTCACTGATGATGTGAGCCTTCAAGTCTTCTTTGAGCATCTCCAAAAGCTTGCTGTCCAATCTTGA 2451 0.4635 MYSSTPVWWVNILSVNGPKSQISLLRFVHTSSQNQTTMSELANTDPEGIDGVRMTWNAWPRTKVEASKCVIPLAANISLIRSHPDIPRLPYAPLRCKTCLSVLNPFSRFDFTAKIWICPFCYQRNHFPPHYNAISETNVPGELYPQYTTVEYVLPLSSNPNSFGNPNLDPAHQLQPSPVFVFLLDTCMIEEEMEFVKSALRQAIGLLPDNALVGFISFGTQVQVHELGFSDMSKVYVFRGSKEIAKEQILEQLGLGASGRRQAGAYQMGLKGGFPASGVTRFLLPASDCEYTLNSLLDELQTDQWPVPPGSRPARCTGVAISVAAGLLGACVPGTGARIIALVGGPCTEGPGSIVSKDLSDPMRSHKDLDKDAAPYFKKAVKFYEGLAKQLVSQDHVLDLFASALDQVGVAEMKVAVERSGGLVVLAESFGHSVFKDSFKRVFEDGEQSLGLCFNGTLEINCSKEIKIQGIIGPCTSLEKKGPSVADTVIGEGNTRAWKMCGLDNSTCLTVMFDLSTSDRSNNPGTINPQFYLQFLTSYQGPDGQLALRVTTVTRRWVDSAVNSEELVQGFDQETAAVVMARYTSLKMEMEEAFDATRWLDRHLIRLCSKFGDYRKDDPSSFTLNPSFSLFPQFMFNLRRSQFVQVFNNSPDETAYFRILLNRENISNAAVMIQPSLISYSFNSLPAPALLDVSSIAADRILLLDSYFSVVIFHGMTIAQWRNLGYQNQPEHQAFAQLLQAPREDAQIIIRDRFPVPRLVVCDQHGSQARFLLAKLNPSATYNNAHEMAAGSDVIFTDDVSLQVFFEHLQKLAVQS 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0113 816 Pfam Sec23/Sec24 beta-sandwich domain 454 558 IPR012990 -
Lele22g0113 816 CDD Sec23_C 664 784 IPR037550 GO:0030127|GO:0090114
Lele22g0113 816 SUPERFAMILY beta-sandwich domain of Sec23/24 45 571 - -
Lele22g0113 816 SUPERFAMILY vWA-like 178 444 IPR036465 -
Lele22g0113 816 Pfam Sec23/Sec24 zinc finger 93 131 IPR006895 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele22g0113 816 FunFam Protein transport protein SEC23 674 778 - -
Lele22g0113 816 Gene3D von Willebrand factor, type A domain 177 452 IPR036465 -
Lele22g0113 816 SUPERFAMILY Helical domain of Sec23/24 572 674 IPR036175 GO:0006886|GO:0006888|GO:0030127
Lele22g0113 816 FunFam Protein transport protein SEC23 569 692 - -
Lele22g0113 816 FunFam Protein transport protein SEC23 90 149 - -
Lele22g0113 816 Pfam Sec23/Sec24 trunk domain 177 443 IPR006896 GO:0006886|GO:0006888|GO:0030127
Lele22g0113 816 Pfam Gelsolin repeat 684 772 IPR007123 -
Lele22g0113 816 SUPERFAMILY Zn-finger domain of Sec23/24 84 155 IPR036174 GO:0006886|GO:0006888|GO:0008270|GO:0030127
Lele22g0113 816 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 675 815 IPR036180 -
Lele22g0113 816 Pfam Sec23/Sec24 helical domain 572 668 IPR006900 GO:0006886|GO:0006888|GO:0030127
Lele22g0113 816 Gene3D - 90 149 - -
Lele22g0113 816 Gene3D Severin 674 778 IPR029006 -
Lele22g0113 816 Gene3D - 47 555 - -
Lele22g0113 816 FunFam Protein transport protein SEC23 177 453 - -
Lele22g0113 816 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 44 815 IPR037364 -
Lele22g0113 816 Gene3D Sec23/Sec24 helical domain 569 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0113 Lele-ChrLele22 644838 651557 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0113 22 644838 651557 Lele23g1943 23 22465748 22471536 hybridization
Lele22g0113 22 644838 651557 Lele24g0101 24 654674 661284 hybridization