Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1369 ATGAAGATCAACGTAAACTCCGTCGCTCGCAAAGTGGAGGTTGACAATCGCATACCCCTCCATTATTATTACCGAATTGCCGATAATCTTCTCAAACAGGCTAATATCTACCGGGAGGAGAACAATATAGTTGACTTGTATGTCATACTTCTCAGATTTTCAAGTTTGGTTTCTGAAACCATACCATTTCATCGAGATTACCAAGGTTCACTTCCCCAAGAAAAAGCAGCGTATAAGAGGAGATTGCTAGCTGTATTGGATGAGCTTGAATCTTTGAAGCCAGAATTCAAAAAGGTTAATGAATTGAACGAGTTACATGGGAATGCTGTATTTCCTAAAGTTAATGAATCCAACAAGGCTTTGCACAGTTCAGTGACTTCATCTTTGGAATGGCCTGCTGTCAATAATAATTCTTACTCAAGAATGGATTCTAAACAGCCGCAGCCTGCTAGGTTGGGTCTGCAGTCTTCATGGGAATATAATAATAACGGTGGTCATTACGTATTTTCAAATGCTGTGCCTATGGACAAGCAGTTTCAGAAACTATCTCTTAGTTTCCCTCTTCCCAAGGAGGAGACTCTATCCAGGCACTCATTTTTGGGACCAAATGGTCTTCGGGGCCAGTGGCTTGGACCAAGTGCAGGAATGAAGGTTCACTATCCAAGCAGTAGTGATTTAACTAGTGCTGAGAATTCAAGTCTGAATCAGGATGGAAAATATGATCTTGTGGCAGTTAAAGAGGGTGATCCAGGAACAGGCATGTCCACAATGGATTCAGTGCTCTCCTTGGATGATGGAAGTTGGTCACGTCCTGCTGATGAGTCATGTCCTCCTCTTTTGAATGAATCAGGGGATAGTCACTTCCAGTTGCTCAACATTAAGCAACCTTTACCCCCTCCAGTTCTTGCTCAGGTTCAGCCAGAATATGCCCCAATTCCTCCTTCAAGAGTTGCAGATCCAAGACCAGGACCGGCTAAGTCTTCTCCGGATTCTCCAGTTGGTCCTGCTGGATATCAACGCCTACATATTCCTGTCAAAATGATGGATGATTTTTTGAGATTGGCTCAGGAAAATACACGGAAAAACCTAGAGACATGTGGTGTTCTTGCAGGGTCCTTGAGAAACAGGGTTTTCCATATTACTACACTCATAATCCCAAAGCAGGAATCAACTCCCGACACGTGCCAAACATTGAATGAGGAAGAGATATTTGAAGTTCAAGACCGTTTATCACTTTTTCCTTTAGGCTGGATACATACACACCCATCACAGACTTGTTTCATGTCATCAGTAGATCTCCATACACATTATTCATACCAGATCATGTTACCAGAGGCAATTGCAATTGTCATGGCCCCTACAGATACAAAAAGTCCACATGGTATATTTCATCTGTCTGATCCTGGCGGTGTGTCAGTAATTCGCAACTGTCAGCAACGTGGATTTCATCCCCATGAGGAGCCTTCCGATGGAAGCCCAATTTATGAGCATTGCTCTCATGTCTATATGAACGGTAACCTGAAGTTTGATGTTGTTGACCTTCGATAG 1548 0.4289 MKINVNSVARKVEVDNRIPLHYYYRIADNLLKQANIYREENNIVDLYVILLRFSSLVSETIPFHRDYQGSLPQEKAAYKRRLLAVLDELESLKPEFKKVNELNELHGNAVFPKVNESNKALHSSVTSSLEWPAVNNNSYSRMDSKQPQPARLGLQSSWEYNNNGGHYVFSNAVPMDKQFQKLSLSFPLPKEETLSRHSFLGPNGLRGQWLGPSAGMKVHYPSSSDLTSAENSSLNQDGKYDLVAVKEGDPGTGMSTMDSVLSLDDGSWSRPADESCPPLLNESGDSHFQLLNIKQPLPPPVLAQVQPEYAPIPPSRVADPRPGPAKSSPDSPVGPAGYQRLHIPVKMMDDFLRLAQENTRKNLETCGVLAGSLRNRVFHITTLIIPKQESTPDTCQTLNEEEIFEVQDRLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDTKSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEPSDGSPIYEHCSHVYMNGNLKFDVVDLR 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1369 515 MobiDBLite consensus disorder prediction 311 338 - -
Lele23g1369 515 Gene3D - 3 119 - -
Lele23g1369 515 FunFam AMSH-like ubiquitin thioesterase 3 1 115 - -
Lele23g1369 515 Pfam USP8 dimerisation domain 7 96 IPR015063 -
Lele23g1369 515 SUPERFAMILY JAB1/MPN domain 340 471 - -
Lele23g1369 515 FunFam AMSH-like ubiquitin thioesterase 3 326 515 - -
Lele23g1369 515 MobiDBLite consensus disorder prediction 311 329 - -
Lele23g1369 515 Gene3D Cytidine Deaminase, domain 2 328 515 - -
Lele23g1369 515 ProSiteProfiles MPN domain profile. 341 471 IPR037518 -
Lele23g1369 515 SMART pad1_6 340 468 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele23g1369 515 CDD MPN_AMSH_like 338 515 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
Lele23g1369 515 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 338 444 IPR000555 GO:0005515|GO:0008233|GO:0008237
Lele23g1369 515 PANTHER AMSH-LIKE PROTEASE 3 515 - -
Lele23g1369 515 MobiDBLite consensus disorder prediction 248 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1369 Lele-ChrLele23 18650033 18659734 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1369 23 18650033 18659734 Lele23g1369 23 18650033 18659734 ECH
Lele21g0669 21 4423928 4430207 Lele23g1369 23 18650033 18659734 hybridization
Lele22g0659 22 4346901 4353403 Lele23g1369 23 18650033 18659734 hybridization