Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0680 ATGGGCGAAACCGGTGGTATCGTCCGGTTTCCGGGGAGCTTGGACCCACGAGCGGAAGAGTTCACGCCGAGAAATCAAACGTTGTACAGGCCGCCGGCTCAACTGTTCTACCCTTGCGCACCCACTACCGGAGTTCAGCTTCAGCCATTGCCTTTTTGTAATGCTGCTCCGGTTGGTGTTCCGTATCCGCCGTTGTTCTCCCCCGCGTCGGCGTACGTTAGCTCAGTGGCTTCGCCGGTGGCTCCGTCGTCATCAGGCTCCCACTCGCCCAAGCGGTCGCTGTTGCTTAGTTCGGTGCCGGCGGAGGGGGCGAGCGAGTCGATGTTGAGGAGGGAATTGGAAGTCTTTGGGGATGTAAGAGGAGTACAAATGGAGAGGATTCGAGAAGGAATAGTGACTGTTCATTTCTACGACCTGAGACATGCAGAGACGGCGTTAATGGCGATTCGAAAGCAGCACATGCAACAACAAACCAGGCTTCGTAATTTCTATTGCCCCGTGTTTAAGTCTCACAATTCGGCGTTGGAGCCGGATTATCACTCCTTCACCACCGCCCCACTTCCGACGCCTCCCCCGACGGCGCGTGGGCTGGTCGCCGGTCGTGCAGTGTGGGCCCAGTTCATTGTCCCAGCTCACAACGCCGTCCCTCATGGCCAAAACCAGGGAACCATCGTGATTTTCAATTTGGATTCGGAAATTCCCGCAGAGACCCTCCGACACACGTTCGAGGCATTTGGTCCTGTGAGGGAACTGAGAGAGACGCCATTGAAGAAGAATCAGAGATTTGTGGAGTTCTTTGACATTAGAGATGCCGCTAAGGCCTTGAATGAGATGAACGGCAAAGAAATTTACGGTAAAGCCGTTGTGATTGAGTTCAGTCGTCCCGGTGGTCATGGCCGGAAGCCCTTCAACCACCACCACCACCACCACCACCACCATCCTACTACTACAATCTCCAAAAACGCAATGCCGTTCAATTTCCAACCTCAATCTCCTCCTCCTCCTCCTCCTTCGCCCCCATTGGCCCACAAAAACGCACGTCGTTTTTCTCCTCTTCCTTCTCCTCGTGCTCATCTTCCTCATCAGCCCCCATCGTTGCCCAGGAAAACAGCTCCAAACAAAGCTAACGGAAACACAGACACTAATCTGGAGAGTGTGAATTCTGTTTCTCTGGAAACGACGAACTTTAGTGGGGTAGTAGAAGAGAAGCAATCGGAAGGGCCTGCGTCGAGAAACGCCGCCTTGAAGAACTGTGGCGGCGAGGCGGTGGCGGGAAGCACGAAGCAGCAACCCAGAAGTAGGAATTGGAAGGGGAAACGAGGGAAGAAGCAGGAGAGCCGGTTTCTAATTAAGGAAGATGCGATTGTGGAATCGAGTTGCAAAGATTCGAGAACTACTGTCATGATCAAGAACATACCCAATAAGTACAGTCAGAAGCTACTATTGAACATGTTGGACAACCACTGCATTCACTGCAACGAGCAGATAGGCCATGGCGGCGACGGCGACGACCAACCATTGTCGTCTTACGATTTCGTTTACCTCCCCATTGATTTCAACAACAAGTGTAACGTGGGGTATGGGTTTGTGAACATGACTTCACCGGAGGCGACGTTGAGACTGTATAAAACATTTCATCTTCAACATTGGGAAGTTTTCAACTCCAGAAAAATATGCGAAGTTACATACGCGAGGGTTCAGGGTTTGGAAGCGTTAAAAGAGCATTTCAAGAACTCAAAGTTCCCATGCGAGGCGGAGCATTACTTGCCGGTGATGTTTTCTCCGCCTCGAGATGGGAGGCAACTGACGGAGCCACTTCCGATCGTGGGTCAGAAGCCGCAGCCAGGTGGAGAAGCCGTTGATGTGGCAGACTGTAAAGCTAGTAATGACGAGGACGACGACTATGTGGTGGAGGGTAAGAATAGAGTAGGTAGCGGCGGCGGCGAAGAACAGAAGCATGACATACAGAGCAGTAGCAGCGAAAACGGCGGTGGAGAGGGTAATGATGATGATGATGACAGAAGAAGTGACGGAGGAGAAGTGGGAAGGAATTAA 2055 0.5221 MGETGGIVRFPGSLDPRAEEFTPRNQTLYRPPAQLFYPCAPTTGVQLQPLPFCNAAPVGVPYPPLFSPASAYVSSVASPVAPSSSGSHSPKRSLLLSSVPAEGASESMLRRELEVFGDVRGVQMERIREGIVTVHFYDLRHAETALMAIRKQHMQQQTRLRNFYCPVFKSHNSALEPDYHSFTTAPLPTPPPTARGLVAGRAVWAQFIVPAHNAVPHGQNQGTIVIFNLDSEIPAETLRHTFEAFGPVRELRETPLKKNQRFVEFFDIRDAAKALNEMNGKEIYGKAVVIEFSRPGGHGRKPFNHHHHHHHHHPTTTISKNAMPFNFQPQSPPPPPPSPPLAHKNARRFSPLPSPRAHLPHQPPSLPRKTAPNKANGNTDTNLESVNSVSLETTNFSGVVEEKQSEGPASRNAALKNCGGEAVAGSTKQQPRSRNWKGKRGKKQESRFLIKEDAIVESSCKDSRTTVMIKNIPNKYSQKLLLNMLDNHCIHCNEQIGHGGDGDDQPLSSYDFVYLPIDFNNKCNVGYGFVNMTSPEATLRLYKTFHLQHWEVFNSRKICEVTYARVQGLEALKEHFKNSKFPCEAEHYLPVMFSPPRDGRQLTEPLPIVGQKPQPGGEAVDVADCKASNDEDDDYVVEGKNRVGSGGGEEQKHDIQSSSSENGGGEGNDDDDDRRSDGGEVGRN 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0680 684 CDD RRM1_EAR1_like 92 160 - -
Lele23g0680 684 MobiDBLite consensus disorder prediction 299 316 - -
Lele23g0680 684 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 288 IPR000504 GO:0003723
Lele23g0680 684 CDD RRM3_EAR1_like 464 568 IPR034458 -
Lele23g0680 684 SUPERFAMILY RNA-binding domain, RBD 81 154 IPR035979 GO:0003676
Lele23g0680 684 FunFam Terminal EAR1-like 1 416 573 - -
Lele23g0680 684 MobiDBLite consensus disorder prediction 668 684 - -
Lele23g0680 684 MobiDBLite consensus disorder prediction 624 649 - -
Lele23g0680 684 Pfam RNA recognition motif 2 464 489 IPR007201 -
Lele23g0680 684 Pfam RNA recognition motif 2 506 577 IPR007201 -
Lele23g0680 684 PANTHER RNA RECOGNITION MOTIF-CONTAINING 446 595 - -
Lele23g0680 684 MobiDBLite consensus disorder prediction 295 444 - -
Lele23g0680 684 MobiDBLite consensus disorder prediction 369 401 - -
Lele23g0680 684 SUPERFAMILY RNA-binding domain, RBD 222 544 IPR035979 GO:0003676
Lele23g0680 684 MobiDBLite consensus disorder prediction 595 684 - -
Lele23g0680 684 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 295 IPR000504 GO:0003723
Lele23g0680 684 SMART rrm1_1 93 161 IPR000504 GO:0003723
Lele23g0680 684 SMART rrm1_1 223 291 IPR000504 GO:0003723
Lele23g0680 684 MobiDBLite consensus disorder prediction 327 342 - -
Lele23g0680 684 Gene3D - 216 303 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0680 Lele-ChrLele23 5259799 5262675 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0680 23 5259799 5262675 Lele23g0680 23 5259799 5262675 ECH
Lele21g1345 21 21894826 21897632 Lele23g0680 23 5259799 5262675 hybridization
Lele22g1341 22 19201948 19204749 Lele23g0680 23 5259799 5262675 hybridization