Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0625 ATGAGGATAAGACCACCTTCGTCTTCTTTACGTATATTACAATTTCGTCTCCAGATAAAGATCGGAGTTTCTTTGATCGGTGACGAGCTGATGGGTGCTACGGGCTCCAAGCTCGAGAAAGCTCTTGGCGACCAATTTCCTGAAGGCGAGCGTTACTTTGGTCTTGAGAACTTTGGCAATACTTGTTATTGCAACAGCGTTTTACAGGCACTTTACTTTTGTGTTCCATTTCGTGAACAATTGCTAGAGTATTATGGAAATAACAAAACCACAGCGGATGCAGAAGAAAATCTTTTAACTTGCTTAGCAGACTTATTTTCTCAGATAACTTCCCAGAAGAAGAAAACAGGTGTCATTGCTCCCAAGAGATTTGTGCAGAGGTTAAAGAAACAGAATGAACTCTTCCGAAGCTATATGCACCAGGATGCACACGAATTCTTGAACTTTTTGTTAAATGAAATTGTGGACATTTTGGAGAAGGAGGCCCAGGCTGCAAAAAGTGATCAAGAGACCTCACCCCCTTCTGATCCTGAAAATGCACCTAAGAATGGTATAGCTAATGGCGCTAAAAAGGAGCCTTTAGTTACGTGGGTGCACAAAAATTTTCAGGGCATACTCACCAATGAGACAAGGTGCTTACGGTGTGAAACAGTGACAGCTAGGGATGAAACATTTTTTGACTTGAGCCTTGATATTGAGCAGAACAGTTCGATCACAAGCTGTTTGAAAAACTTCAGTTCCACTGAGACTCTGAATGCTGAAGACAAATTTTTTTGTGACAAGTGCTGCAGTTTGCAAGAAGCTCAGAAGAGGATGAAAATAAAGAAACCACCTCACATCTTGGTCATCCATCTTAAGCGGTTCAAGTACGTTGAACAGCTGGGTCGAAACAAGAAGCTGTCTTACAGGGTTGTCTTCCCTCTTGAGCTGAAGTTGGGCAACACTCTGGAAGATGCGGATATTGAGTATTCCCTATTTGCAGTGGTTGTTCATGTTGGCAGTGGGCCCAACCACGGGCATTATGTCAGCCTCGTGAAAAGCCATAACCACTGGTTATTTTTTGATGACGAAAATGTCGAGATGATTGATGAATCTGCTGTGCAGACATTCTTTGGCTCAGCACAGGAGTATTCCAGTAATACAGACCATGGGTACATTCTGTTCTATGAGAGCCTTGGCTCTGGAAACTGGAACTAG 1197 0.4277 MRIRPPSSSLRILQFRLQIKIGVSLIGDELMGATGSKLEKALGDQFPEGERYFGLENFGNTCYCNSVLQALYFCVPFREQLLEYYGNNKTTADAEENLLTCLADLFSQITSQKKKTGVIAPKRFVQRLKKQNELFRSYMHQDAHEFLNFLLNEIVDILEKEAQAAKSDQETSPPSDPENAPKNGIANGAKKEPLVTWVHKNFQGILTNETRCLRCETVTARDETFFDLSLDIEQNSSITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYVEQLGRNKKLSYRVVFPLELKLGNTLEDADIEYSLFAVVVHVGSGPNHGHYVSLVKSHNHWLFFDDENVEMIDESAVQTFFGSAQEYSSNTDHGYILFYESLGSGNWN 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0625 398 FunFam Ubiquitin carboxyl-terminal hydrolase 3 35 391 - -
Lele23g0625 398 Pfam Ubiquitin carboxyl-terminal hydrolase 53 389 IPR001394 GO:0004843|GO:0016579
Lele23g0625 398 MobiDBLite consensus disorder prediction 163 187 - -
Lele23g0625 398 CDD Peptidase_C19G 54 390 - -
Lele23g0625 398 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 54 69 IPR018200 GO:0004843|GO:0006511
Lele23g0625 398 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 53 392 IPR028889 -
Lele23g0625 398 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 323 341 IPR018200 GO:0004843|GO:0006511
Lele23g0625 398 Gene3D Cysteine proteinases 34 391 - -
Lele23g0625 398 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 43 391 - -
Lele23g0625 398 SUPERFAMILY Cysteine proteinases 51 390 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0625 Lele-ChrLele23 4772480 4779032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0625 54 363 Miscellaneous Gene Families AT2G24640 28.616 1.07e-29 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1388 21 22370059 22374609 Lele23g0625 23 4772480 4779032 hybridization
Lele22g1381 22 19617725 19622009 Lele23g0625 23 4772480 4779032 hybridization