Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0518 ATGCTGAGCTCTGATGATGTGTTCTTCGACTCAGCAGATTATCTGTCACCTCAAGAATCTGATTTATTAGGTTCCAACGAGTTTGATTATGGGATTTGGTTGAATGAACCTCAAAGTGTGAAGGAAAGAAGACAACGTTTTCTTGTGGGAATGGGTTTATCTGATATGTCTTCAAATGTAGCTGTCTTAAATGTAGTTGAGAAAGAAGAAACTTCTGAAGCAAAAATCCTCTTTGATGAAGAAGAAGAAGAAGATGTTGTAAGCTTTCATGAAAGCGGACACAAAGAAGCTGAGGTCCAAGAAGGACATGGGGATTCAGATATGGAAAAAGAGAAGAAGAAGAAGAAGAAAAACTGGTGGGAGAGATTTGTGAACGAGAGGAAAGAAAATGGAGGAGAAAAAATCAGATCAAAACTCAACAAAGGGGCAAATAATAATAAAACTCATAGGATAAAGGTGAAGAAGAACCAGAAGAGGTGGAAGGAGTTAAGTGGGTTATATGTTGGACAAGAGATTACAAAAGCTCACAATGGAATTATAAGGACTATGAAATTCAGTCCCAATGGAAAGTATCTTGGAACAGGAGGTGAAGATGGAGTCGTAAGAATATGGCGTGTGGTGTTACAGGATATATCTAGTGAATGTTTCAATGCAGAAGAAGACATTCTTGTTACCAAACTGAAACAAGACATGTTCTGTTTTTGGAAGAAGAAAAAGTCAAGTCAAAGAAACTACCTTGTACTTCCACACAAGGTTTTTCAAATTGAGGAATCAATACTGCAAGTATTCTTTGGTCATTCCGGTGATGTCTTGGACTTGGCATGGTCTAATTCAGAAGTGAGTTATCTTTTTTTTATTCTCCTTTCATCTTCCATGGATAAAACCGTCCGTTTGTGGCAAATTGGATGTGATCAATGCTTAAGTGTTTTTTGTCATAATGATTATGATGCAGTGGCATGCATTCAAGTGAATCCAGTTGATGAAAATTACTTCATAAGTGGGTCCATTGATGGAAAAGTCAGAATATGGGGATTACATGAAGAGAGGGTTGTTGACTGGGCAGATATACATGATGTCATAACTGCTATAAGTTACAAGCCAGATGGGAAATTGGCTCCATTTCAGGAACTTGCCGGTTTTATGCTACTTCAGATTCATGTTGATGGGAAGAAGAGATCAAGGGGAAACAAAATTAGGGGCATTCAGTTTTCCCATGAGAATCAGCAGAGAGTTTTGATCACATCAGAAGATTCCAAATTTTGCTTATTGGAAGGGATTGATGTTGTCCAAAAATACAAAGTACCTTGGTCAACAATGAATACAAACCAAATATCAGACTTACAACCCCAAATGGTTAAAGATAGAGCAGAATGTTTCTGTCACAGTAATTGGTTCTCCATTGATCACATGTGTCGAGGTTCTGTGACGTGGCCAGAGGAGAAGCTTCCTGAAGTGTGGAAGTCAGCTTCTGCAGAAGAAGAAGATGCTTATATACATCAATGGAAGAAGAAGCTATGTCCAAAGGATCCGTGGGGTTTGTCAATTGTGACAGCAAGTTGTGATGGAACTATAAAGATATTTATAGTTCCTTAA 1593 0.381 MLSSDDVFFDSADYLSPQESDLLGSNEFDYGIWLNEPQSVKERRQRFLVGMGLSDMSSNVAVLNVVEKEETSEAKILFDEEEEEDVVSFHESGHKEAEVQEGHGDSDMEKEKKKKKKNWWERFVNERKENGGEKIRSKLNKGANNNKTHRIKVKKNQKRWKELSGLYVGQEITKAHNGIIRTMKFSPNGKYLGTGGEDGVVRIWRVVLQDISSECFNAEEDILVTKLKQDMFCFWKKKKSSQRNYLVLPHKVFQIEESILQVFFGHSGDVLDLAWSNSEVSYLFFILLSSSMDKTVRLWQIGCDQCLSVFCHNDYDAVACIQVNPVDENYFISGSIDGKVRIWGLHEERVVDWADIHDVITAISYKPDGKLAPFQELAGFMLLQIHVDGKKRSRGNKIRGIQFSHENQQRVLITSEDSKFCLLEGIDVVQKYKVPWSTMNTNQISDLQPQMVKDRAECFCHSNWFSIDHMCRGSVTWPEEKLPEVWKSASAEEEDAYIHQWKKKLCPKDPWGLSIVTASCDGTIKIFIVP 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0518 530 SUPERFAMILY WD40 repeat-like 172 527 IPR036322 GO:0005515
Lele23g0518 530 SMART WD40_4 256 300 IPR001680 GO:0005515
Lele23g0518 530 SMART WD40_4 303 344 IPR001680 GO:0005515
Lele23g0518 530 SMART WD40_4 165 205 IPR001680 GO:0005515
Lele23g0518 530 MobiDBLite consensus disorder prediction 87 114 - -
Lele23g0518 530 Pfam WD domain, G-beta repeat 305 343 IPR001680 GO:0005515
Lele23g0518 530 Pfam WD domain, G-beta repeat 173 204 IPR001680 GO:0005515
Lele23g0518 530 Pfam WD domain, G-beta repeat 259 299 IPR001680 GO:0005515
Lele23g0518 530 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 206 - -
Lele23g0518 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 263 301 IPR001680 GO:0005515
Lele23g0518 530 PANTHER WD REPEAT DOMAIN 44 95 437 IPR040324 -
Lele23g0518 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 311 353 IPR001680 GO:0005515
Lele23g0518 530 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Lele23g0518 530 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Lele23g0518 530 PRINTS G protein beta WD-40 repeat signature 192 206 IPR020472 -
Lele23g0518 530 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 206 IPR001680 GO:0005515
Lele23g0518 530 Gene3D - 167 502 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0518 Lele-ChrLele23 3795093 3798129 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1495 21 23259914 23262979 Lele23g0518 23 3795093 3798129 hybridization
Lele22g1484 22 20602846 20605993 Lele23g0518 23 3795093 3798129 hybridization