Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0181 ATGGTTTTTGATTCAATCGCCACCGCTCCTACTCCTTCAGCTGCAAACGCTAAGAATCTGGGCAAAAAAAAGAGGACCAACAGGTCTGCAAAATTAAAGCAATGTAAGATTGATGCCCGTCGCGAGCAGTGGCTTTCTCAAGTTATGGTCAAGAATAAGAATTGCAAGGACGGAGGGGACGATGGTCACGCGCCCTCGATGCCTGTTGGGGAAGACAACAAACGTTCATGGGAGAAATTGGAGATGAGTCCTAGAGCTGAAGAGATTGATGGATCGATCCATCAAGATGGCTATATGGAATCTCTATCCAATAGTCCCTCTAGTGTTGATAGTAGCATGTTGGGGAGTAATGATTCAGGAACAAATTTCACTGGGAGCAGCAGTAGCAGCGGCAGCAGTGCTGGGTCCTGCTCCGGCAATGTCACGGAAGAAGAAGTCGATGATGATTGCTTGGATGATTGGGAGGCTGTGGCTGATGCTTTAGCCGCCGATGATAAGCATCAAAATCCATGTTCGGAGCTGCCCACCACTCATGAAACGGTTGTGCAAATGGTTTCGCCCCGTGAAATGATTCATGGGTCGAATTTAGGTGCATCGAATTCTAAAACCGAGAGTGATAGAATAGCTCCATCGGCCTCTGGCAATAGCCGAGCTTGGAGGTCTGATGATGCATTTCGTCCTCAGAGTCTCCCTAATCTATCTAAGCAGTATAGTTTACCAAATACAGGCTCTCGTAGTGGAGGAGGGATCCCATGGGCTCGCCCTGCTGCGCCATCCTCTTGCCCAATATGCTGTGAGGATCTTGACTTGACAGATTCATGCTTTTTACCCTGCTTGTGTGGATTTCGGCTTTGCCTCTTCTGTCACAAGAGGATTCTTGAGCAGGATGGCCGCTGTCCTGGGTGCAGGAAGCCTTATGATAGCAAATCTGTTGAGCCAGAGGCAAACGTCCATGGAAGCAGCCAGACTCTTCGTTTGGAGCGTTCTCGTAGCATGATTTATAGGACATAG 1011 0.4857 MVFDSIATAPTPSAANAKNLGKKKRTNRSAKLKQCKIDARREQWLSQVMVKNKNCKDGGDDGHAPSMPVGEDNKRSWEKLEMSPRAEEIDGSIHQDGYMESLSNSPSSVDSSMLGSNDSGTNFTGSSSSSGSSAGSCSGNVTEEEVDDDCLDDWEAVADALAADDKHQNPCSELPTTHETVVQMVSPREMIHGSNLGASNSKTESDRIAPSASGNSRAWRSDDAFRPQSLPNLSKQYSLPNTGSRSGGGIPWARPAAPSSCPICCEDLDLTDSCFLPCLCGFRLCLFCHKRILEQDGRCPGCRKPYDSKSVEPEANVHGSSQTLRLERSRSMIYRT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0181 336 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 257 312 IPR039780 GO:0004842|GO:0030014
Lele23g0181 336 MobiDBLite consensus disorder prediction 313 336 - -
Lele23g0181 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 321 IPR013083 -
Lele23g0181 336 MobiDBLite consensus disorder prediction 227 245 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 1 32 - -
Lele23g0181 336 CDD mRING-HC-C4C4_CNOT4 261 304 IPR039515 -
Lele23g0181 336 Pfam RING/Ubox like zinc-binding domain 261 307 - -
Lele23g0181 336 ProSiteProfiles Zinc finger RING-type profile. 261 303 IPR001841 -
Lele23g0181 336 SUPERFAMILY RING/U-box 258 313 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 314 329 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 192 251 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 51 147 - -
Lele23g0181 336 FunFam RING/U-box superfamily protein 254 319 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 193 218 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 97 140 - -
Lele23g0181 336 MobiDBLite consensus disorder prediction 72 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0181 Lele-ChrLele23 1162093 1163331 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0181 23 1162093 1163331 Lele23g0181 23 1162093 1163331 ECH
Lele21g1829 21 25847991 25849229 Lele23g0181 23 1162093 1163331 hybridization
Lele22g1804 22 23158641 23160062 Lele23g0181 23 1162093 1163331 hybridization