Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g1829 ATGGTTTTTGATTCAATCGCCTCCGCTCCTACTCCTTCAGCTGCAAACGCTAAGAATCTGGGCAAGAAAAAGAGGACCAACAGGTCTGCAAAATTAAAGCAATGTAAGATTGATGCCCGTCGCGAGCAGTGGCTTTCTCAAGTTATGGTCAAGAGTAAGAATTGCAAGGATGGAGGGGACAATGGTCACGCGCCCTCGATGCCTGTTGGGGAAGACAACAAACGTTCCTGGGAGAAATTGGAGATGAGTCCTAGAGCTGAAGAGATTGATGTATCGATCCATCAAGATGGCTATATGGAATCTCTATCCAATAGTCCCTCTAGTGTTGATAGTAGCATGTTGGGGAGTAATGATTCAGGAACAAATTTCACTGGGAGCAGCAGTAGCAGCGGCAGCAGTGCTGGGTCCTGCTCCGGCAATGTCACGGAAGAAGAAGGCGATGATGATTGCTTCGATGATTGGGAGGCTGTGGCTGATGCTTTAGCCGCCGATGACAAGCATCAAAATCCATGTTCGGAGCTGCCCACCACTGATGAAACGGTTGTGCAAATGGTTTCGCCCCGTGAAATGATTCATGGGTCGAATTTAGGTGCATCGAATTCCAAAACCGAGAGTGATAGAATAGTTCCATCGGCCTCTAGCAATAGCCGAGCTTGGAGGCCTGATGATGCATTTCGTCCTCAGAGTCTTCCTAATCTATCTAAGCAGTATAGTTTACCAAATACAGGCTCTCGTAGTGGAGGAGGGATCCCATGGGCTCGCCCTGCTGCGCCATCCTCTTGCCCAATATGCTGTGAGGATCTTGACTTGACAGATTCATGCTTTTTACCCTGCTTGTGCGGATTTCGGCTTTGCCTCTTTTGTCACAAGAGGATTCTTGAGCAGGATGGCCGCTGTCCTGGGTGCAGGAAGCCTTATATTAGCAAATCTGTTGAGCCAGAGGCAAACGTCCATGGAGACAGCCAGGCTCTTCGTTTGGAGCGTTCTCGTAGCATGATTTATAGGACATAG 1011 0.4866 MVFDSIASAPTPSAANAKNLGKKKRTNRSAKLKQCKIDARREQWLSQVMVKSKNCKDGGDNGHAPSMPVGEDNKRSWEKLEMSPRAEEIDVSIHQDGYMESLSNSPSSVDSSMLGSNDSGTNFTGSSSSSGSSAGSCSGNVTEEEGDDDCFDDWEAVADALAADDKHQNPCSELPTTDETVVQMVSPREMIHGSNLGASNSKTESDRIVPSASSNSRAWRPDDAFRPQSLPNLSKQYSLPNTGSRSGGGIPWARPAAPSSCPICCEDLDLTDSCFLPCLCGFRLCLFCHKRILEQDGRCPGCRKPYISKSVEPEANVHGDSQALRLERSRSMIYRT 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g1829 336 MobiDBLite consensus disorder prediction 193 224 - -
Lele21g1829 336 Pfam RING/Ubox like zinc-binding domain 261 306 - -
Lele21g1829 336 MobiDBLite consensus disorder prediction 1 32 - -
Lele21g1829 336 CDD mRING-HC-C4C4_CNOT4 261 304 IPR039515 -
Lele21g1829 336 ProSiteProfiles Zinc finger RING-type profile. 261 303 IPR001841 -
Lele21g1829 336 SUPERFAMILY RING/U-box 258 310 - -
Lele21g1829 336 MobiDBLite consensus disorder prediction 53 77 - -
Lele21g1829 336 FunFam RING/U-box superfamily protein 254 319 - -
Lele21g1829 336 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 321 IPR013083 -
Lele21g1829 336 MobiDBLite consensus disorder prediction 99 140 - -
Lele21g1829 336 MobiDBLite consensus disorder prediction 193 218 - -
Lele21g1829 336 MobiDBLite consensus disorder prediction 99 148 - -
Lele21g1829 336 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 257 311 IPR039780 GO:0004842|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g1829 Lele-ChrLele21 25847991 25849229 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1829 21 25847991 25849229 Lele21g1829 21 25847991 25849229 ECH
Lele21g1829 21 25847991 25849229 Lele23g0181 23 1162093 1163331 hybridization
Lele21g1829 21 25847991 25849229 Lele24g1765 24 22816803 22818041 hybridization