Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0055 ATGGCCCAGAACCAGAGACGCACAAGCGTCATCGACTTTCTGGGGGAAGAAATAGTGGGAATCATCGCACCAGTATCAATCTGCATGTTCTTGGTCGTCGTCTTGGTCTCAATCCTCAATACCAGTACCGACTCTTCTTCAGCATCAATCTCCAGGGTAGCCACCATTGCATACAGTGAGACCAGCTCAGACTCTTTCTGGGACAAATTCGTAGGTGCCATTCTGAACTCTTTGGTATTTGTAGCCGTTGTCACTGTTGCAACCTTTGTTTTGGTCCTTCTCTTCTATCTTAGATGCACCAGATTCTTAAAACTATACATGGGGTTCTCTTCTTTTGTTTTTCTGGTATTCTTGGGTGGTGAAATTGCCCTACTCTTTATTCAAGATTTTAGTATCCCTATTGATTGCGTAACCTTTTTCCTGGCTTTGTTCAATTTCGCTGTTGTTGGTGTATTGGCTGTCTTCATGTCCAAAATGGCAATTGTTGTGACTCAAGGTTACTTGATTCTTATTGGGGTGTTGGTTGCTTATTGGTTCACCATGTTACCTGAATGGACCACCTGGGTGCTTCTGGTTGCCATGGCATTGTATGATCTTGCGGCTGTTTTATTACCAGTTGGACCATTAAGACTTTTGGTAGAACTTGCAATCTCAAGAGATGAAGAAATTCCTGCACTGGTTTATGAGGCTAGGCCAGTGAACCATGACAAGGTGGATCCAAGGGGTGATGTAACTCAGAGGAGGCTGTGGAGAGATAGGAGGGTTGAGAATTCAATTCCACCAACTGATACCAACTCAAGTGTCAATTCTGTGCTGGGTGAAACCCAAGATAATGAATCAAACTCCAATCTAGACACAAATTTGGATAGGGAAAATGCTGTTTCAAATTCAAATCCTTCTACTAGCATCCATAATGACAGAAATCTGGTGACAGCTGAAGAGGGACGGGTTATAGAGACCGATTCAGAGCTCTCTGCTCCATTGATTGATCATGAAATGAATGTGCAGGTTCACAGAGGAGAAGATGAAGTGACAAGTGAAAGCTTGATGGCAGAGGGGATTGGGTTAGGGTCATCTGGAGCAATAAAGCTAGGGTTAGGAGATTTCATTTTCTACAGTGTTTTGGTTGGAAGGGCAGCGATGTATGATTATATGGCAGTGTATGCATGTTATCTTGCTATCATTGCTGGGCTGGGCATCACTTTGATGCTATTAGCATTGTATCAGAAAGCCTTACCGGCTCTTCCAGAGTCAATCATGCTGGGAGTATCCTTCTATTGCTTGACCAGGTTCTTGCTTGAACCATTTGTTCTGCAGTGTTCCTTGAACCTCTTCATGTTCTAA 1344 0.4338 MAQNQRRTSVIDFLGEEIVGIIAPVSICMFLVVVLVSILNTSTDSSSASISRVATIAYSETSSDSFWDKFVGAILNSLVFVAVVTVATFVLVLLFYLRCTRFLKLYMGFSSFVFLVFLGGEIALLFIQDFSIPIDCVTFFLALFNFAVVGVLAVFMSKMAIVVTQGYLILIGVLVAYWFTMLPEWTTWVLLVAMALYDLAAVLLPVGPLRLLVELAISRDEEIPALVYEARPVNHDKVDPRGDVTQRRLWRDRRVENSIPPTDTNSSVNSVLGETQDNESNSNLDTNLDRENAVSNSNPSTSIHNDRNLVTAEEGRVIETDSELSAPLIDHEMNVQVHRGEDEVTSESLMAEGIGLGSSGAIKLGLGDFIFYSVLVGRAAMYDYMAVYACYLAIIAGLGITLMLLALYQKALPALPESIMLGVSFYCLTRFLLEPFVLQCSLNLFMF 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0055 447 FunFam Presenilin 336 438 - -
Lele23g0055 447 MobiDBLite consensus disorder prediction 259 305 - -
Lele23g0055 447 SMART psh_8 71 433 IPR006639 GO:0004190|GO:0016020
Lele23g0055 447 MobiDBLite consensus disorder prediction 252 305 - -
Lele23g0055 447 PRINTS Presenilin family signature 181 188 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele23g0055 447 PRINTS Presenilin family signature 22 32 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele23g0055 447 PRINTS Presenilin family signature 198 215 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele23g0055 447 Gene3D Presenilin 341 439 IPR042524 -
Lele23g0055 447 Pfam Presenilin 14 437 IPR001108 GO:0004190|GO:0016020|GO:0016485
Lele23g0055 447 PANTHER PRESENILIN 5 447 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0055 Lele-ChrLele23 355030 356373 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0055 1 447 Miscellaneous Gene Families AT2G29900 61.298 2.85e-163 464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g0055 23 355030 356373 Lele23g0055 23 355030 356373 ECH
Lele21g1959 21 26632129 26635268 Lele23g0055 23 355030 356373 hybridization
Lele22g1923 22 23951457 23952980 Lele23g0055 23 355030 356373 hybridization