Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1657 ATGCCAGAAGCTTATGATCAGGAAGGGGTTGTTAATCAGGAAAAAAGGTTTGCTGTGGCTCTGCAGCGCTACAGGGATCCAAATGCTGAGGAGAAAAGGAACCCATTTGCTGAACAAGAAGCATGGGAGGAGCATCAAATTGGGAAGGAAACGTTGAAGTTTGGTTCTAAAAATAAAAGACAAGCATCTGATGACTTTCAGTTTGTGTTTGAGGACCAGATTGATTTTATCAAAGCATCAGTGATGGATGGAGATGAGTTTGATAATGAGGAGATGACAGATTCACTTGAAAAGTCCAAGGCCAAGACAGCTTCAGAGGCACTTCAGGTACTTGTGATCGTTGGTGAAACTGGTTCTGGAAAGACTACCCAGATACCCCAATATCTTCATGAAGCTGGGTACACAAAGCAGGGGAAGATTGCCTGTACTCAGCCTCGACGAGTCGCTGCTATGAGTGTTGCTGCTCGAGTCTCTCAGGAAATGGGTGTGAAATTAGGACATGAGGTTGGTTACTCCATTCGTTTTGAGGACTGCACCTCTGAGAAGACTATTCTCAAATATATGACGGATGGAATGCTATTGAGAGAATTTCTTGGTGAACCTGATCTAAACAGCTACAGTGTTGTGATGGTGGATGAGGCTCATGAAAGAACACTTTCAACTGATATTTTGTTTGGATTAGTAAAGGATATTTCTCGTTTTCGGCCTGATCTTAAGTTGCTGTTCTCAAGTGCCACGCTAGATGCAGAGAAGTTCAGTGATTATTTTGATTCTGCTCCCATATCCAAAATTCCTGGAAGACGATATCCTGTTGAAATACACTTTACCAAGGCACCAGAAGCTGACTATTTAGATGCTGCTATTGTAACAGCTCTCCAAATCCATGTAACTCAACCTCCTGGAGATATATTGGTGTTCTTAACTGGTCAAGAAGAAATTGAAACGGCAGAAGAGATCATGAAGCATCGAACTAGGGGTTTGGGGACTAAAATTGCTGAGCTAATTATCTGTCCCATATACGCGAACCTACCAACTGAGCTGCAAGCTAAGATATTTGAACCAACTCCTGAAGGAGCACGGACGGTAGTCCTTGCTACTAATATCGCTGAAACATCATTGACAATTGATGGGATCAAGTACGTTATTGATCCAGGGTTCTGTAAGATGAAAAGTTATAATCCAAGAACAGGAATGGAATCCTTGTTAATATCGCCAATTTCAAAAGCCTCAGCAAATCAAAGAGCTGGTCGCTCTGGAAGAACAGGTCCTGGAAAGTGCTTCCGGCTTCTTGGGATTCATGACTTACTGCACTTTGATTTTATGGATCCTCCACCTGCTGAGGCTTTATTGAAAGCACTGGAGCTTCTATTTGCATTAAGTGCATTAAATAAGCTTGGGGAGTTAACAAAGGTAGGTAGGCGGATGGCAGAGTTCCCCCTTGATCCCATGTTATCTAAAATGATAGTGGCTTCAGACAAGTACAAGTGTTCAGAGGAGGTCATTTCTATTTCCGCTATGCTCTCTATTGGGAACTCAGTATTTTACCGTCCGAAGGATAAACAAGTACATGCAGATAATGCACGATTGAATTTCCACACCGGAAATGTTGGAGATCATATTGCACTGCTAAAGGTATACAATTCATGGAAGGAGACCAATTACTCAACACAGTGGTGCTACGAAAATTATATACAGGTGAGGAGTATGAAACGGGCTAGGGATATCCGAGATCAACTTGCAGGCCTTCTGGAGAGGGTTGAAATTGAACTAACTTCAAATGAAGGCTTTTTCCCGCATTCCGCAAGGCTGCAAAAGAATGGATCCTATCGGACTGTAAAACATCCACAGACTGTTCATATACATCCCGGTTCTGGACTGGCTCAGGTGCTTCCAAGATGGGTTGTATGTCATGAACTGGTTCTAACGACCAAGGAGTACATGAGACAGGTCACGGAACTAAAGCCAGATTGGTTGGTGGAGATAGCCCCTCACTATTACCAGCTTAAGGATGTTGAAGATGAGTCGTCGAATATTCCGAAATGTGCTAAGTCAACGATGAAAAATCAAAAGTCTACAGGTTTAACGCATTTTCGATCACCGATACAAGAAACAGAGACAAACCAGAGAGTTAGAGTTAGAGAGAGAGAGAGAGTTATGGCGGCTACAGGAGAGAGTCCACGCAGCCCAGAGGCGAAGCTGGGGATGCGAGTGGAGGATCTGTGGGACGTTCAGGAGCCACAGCTAAGTCCTACCGAGAAGCTCAACGCGTGCTTCGAAAGCATCCCTGTGACTGCTTTCCCTCCAGCTCCTTCAAGTCAAGTGGTGGAGATAAAATCAGACGCCACCCTACCGGAAGCTGTTGAAACACTAGCACACCACAATATTCTGAGCGCACCGGTGGTGGATGTTAAAGCACCTGAAGGCGCTACTTGGATTGACAGATACATCGGAATAGTTGAGTTTGCCGGAATTGTTGTATGGGTCTTACAACAGTCTGAGCCTCCATCTCCCAAGAGTCCAAGCAGTGGAGGTGCTAATGGGTTCAGTTATCCTCAAGAACTTGGGGGCTTAGGATTTGGATCTGCTGCAACAACTTCTGGCAACTATTTTGAGGATTTAACTTCTTCTGAATTTTATAAGAATACCAAGGTTTGTGATATTTCAGGATCATTCCGCTGGGCCCCATTTCTTGCATTGCAAAGATCAAACTCATTTCTGACCATGCTCTTGCTACTTTCCAAGTATAATATGAAGAGTATTCCTGTGGTAGATCTGGGTGCAGAGAAAATTGATAATGTTATCACACAGTCTGGTGTTATTCATATGTTGGCAGAGTGCGTGGGGCTTCAGTGGTTCGAGAGCTGGGGAACCAAGAAACTATCTCAAGTTGGTCTTCCTGTAATGACACCTGATTGTATCATTAAGGTTTATGAGGATGAACCAGTGCTTCAGGCATTTAGATTGATGAGGAAAAAGAGGATTGGAGGCTTACCCGTAATAGAAAGAGGAAGCAACAAGGCTGTGGGTAACATAAGCCTACAAGATGTTCAATTCTTGCTAACTGCTCCAGAAATTTACCACGATTATAGAGCTATTACTGTAAAACACTTCCTAACGGCAGTTAGAAGCTACTTAGAGAAGCACAAAGAGGTCTTCCCATTGTTAAGCACCTTGGTTACATGCCAAAGGGATTGCACAATCAAAGAATTGATTCAATTGCTTGACCATGAGAAGAGTCATCGGATGTATGTTGTAACTGATGATGGTGATCTAGAAGGAGTGATCACACTCAGAGATATCATCTCAAGGCTAGTGGACGAGCCTAAAGGCTATTTTGGTGATTTCTTTGATGGTGTTCTTCCTTTGCCTCCAGACAGCCGGGTCTAA 3387 0.4352 MPEAYDQEGVVNQEKRFAVALQRYRDPNAEEKRNPFAEQEAWEEHQIGKETLKFGSKNKRQASDDFQFVFEDQIDFIKASVMDGDEFDNEEMTDSLEKSKAKTASEALQVLVIVGETGSGKTTQIPQYLHEAGYTKQGKIACTQPRRVAAMSVAARVSQEMGVKLGHEVGYSIRFEDCTSEKTILKYMTDGMLLREFLGEPDLNSYSVVMVDEAHERTLSTDILFGLVKDISRFRPDLKLLFSSATLDAEKFSDYFDSAPISKIPGRRYPVEIHFTKAPEADYLDAAIVTALQIHVTQPPGDILVFLTGQEEIETAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPEGARTVVLATNIAETSLTIDGIKYVIDPGFCKMKSYNPRTGMESLLISPISKASANQRAGRSGRTGPGKCFRLLGIHDLLHFDFMDPPPAEALLKALELLFALSALNKLGELTKVGRRMAEFPLDPMLSKMIVASDKYKCSEEVISISAMLSIGNSVFYRPKDKQVHADNARLNFHTGNVGDHIALLKVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLAGLLERVEIELTSNEGFFPHSARLQKNGSYRTVKHPQTVHIHPGSGLAQVLPRWVVCHELVLTTKEYMRQVTELKPDWLVEIAPHYYQLKDVEDESSNIPKCAKSTMKNQKSTGLTHFRSPIQETETNQRVRVRERERVMAATGESPRSPEAKLGMRVEDLWDVQEPQLSPTEKLNACFESIPVTAFPPAPSSQVVEIKSDATLPEAVETLAHHNILSAPVVDVKAPEGATWIDRYIGIVEFAGIVVWVLQQSEPPSPKSPSSGGANGFSYPQELGGLGFGSAATTSGNYFEDLTSSEFYKNTKVCDISGSFRWAPFLALQRSNSFLTMLLLLSKYNMKSIPVVDLGAEKIDNVITQSGVIHMLAECVGLQWFESWGTKKLSQVGLPVMTPDCIIKVYEDEPVLQAFRLMRKKRIGGLPVIERGSNKAVGNISLQDVQFLLTAPEIYHDYRAITVKHFLTAVRSYLEKHKEVFPLLSTLVTCQRDCTIKELIQLLDHEKSHRMYVVTDDGDLEGVITLRDIISRLVDEPKGYFGDFFDGVLPLPPDSRV 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1657 1128 ProSiteProfiles CBS domain profile. 1054 1110 IPR000644 -
Lele22g1657 1128 Gene3D - 268 436 IPR027417 -
Lele22g1657 1128 Coils Coil 569 589 - -
Lele22g1657 1128 CDD CBS_pair_SF 909 1016 - -
Lele22g1657 1128 Pfam Helicase conserved C-terminal domain 294 422 IPR001650 -
Lele22g1657 1128 SMART ultradead3 65 274 IPR014001 -
Lele22g1657 1128 Gene3D - 85 267 IPR027417 -
Lele22g1657 1128 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 268 437 - -
Lele22g1657 1128 ProSiteProfiles CBS domain profile. 770 836 IPR000644 -
Lele22g1657 1128 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 435 536 - -
Lele22g1657 1128 Gene3D - 751 949 IPR046342 -
Lele22g1657 1128 ProSiteProfiles CBS domain profile. 968 1029 IPR000644 -
Lele22g1657 1128 Pfam CBS domain 967 1016 IPR000644 -
Lele22g1657 1128 Pfam CBS domain 1058 1105 IPR000644 -
Lele22g1657 1128 CDD SF2_C_RHA 269 429 - -
Lele22g1657 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 584 IPR027417 -
Lele22g1657 1128 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 207 216 IPR002464 -
Lele22g1657 1128 Gene3D - 957 1107 IPR046342 -
Lele22g1657 1128 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 595 665 IPR011709 -
Lele22g1657 1128 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 102 265 IPR014001 -
Lele22g1657 1128 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 95 267 - -
Lele22g1657 1128 PANTHER ATP-DEPENDENT RNA HELICASE 104 429 - -
Lele22g1657 1128 SMART helicmild6 317 422 IPR001650 -
Lele22g1657 1128 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 288 477 IPR001650 -
Lele22g1657 1128 SUPERFAMILY CBS-domain pair 971 1114 IPR046342 -
Lele22g1657 1128 Pfam Helicase associated domain (HA2) 452 526 IPR007502 GO:0004386
Lele22g1657 1128 Gene3D - 437 593 - -
Lele22g1657 1128 SMART ha2_5 451 543 IPR007502 GO:0004386
Lele22g1657 1128 CDD CBS_pair_SF 973 1101 - -
Lele22g1657 1128 SUPERFAMILY CBS-domain pair 746 944 IPR046342 -
Lele22g1657 1128 SMART cbs_1 895 944 IPR000644 -
Lele22g1657 1128 SMART cbs_1 1057 1105 IPR000644 -
Lele22g1657 1128 SMART cbs_1 773 829 IPR000644 -
Lele22g1657 1128 SMART cbs_1 972 1021 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1657 Lele-ChrLele22 22104135 22115280 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1657 22 22104135 22115280 Lele22g1657 22 22104135 22115280 ECH
Lele22g1657 22 22104135 22115280 Lele23g0332 23 2322504 2324982 hybridization
Lele22g1657 22 22104135 22115280 Lele24g1621 24 21828978 21831392 hybridization