Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g1406 ATGGGAGTTATTAGAGGCACTCTGGAGTACAGCAACAGCAACAACCACCACATCAAGATGAAGAAGAAGCCATTTCAGACTGTGGAGCTCAAGGTCAGAATGGACTGTGATGGCTGTGAACTTAAAGTCAAGAAAGCCCTCTCTTCATTAACTGGGGTGAAATCGGTGGAGATAAACAGGAAGTTGCAGAAGGTGACGGTGACAGGGCATGTGGAAGCGAGCAAGGTGTTGAAGAAGGCAAAAGCGACGGGTAAGAGAGCAGAGATGTGGCCGTATGTGCCATATAACTTGGTGGCTCAGCCGTATGCGGCGCCGGCTTATGACAAGAGGGCTCCTCCTGGTTTTGTGAGAAACGTTGACTCTTCTTCTTCTTCCTCCTCCATTGGAGCACTTGTCACCAGATATGAAGATCCTTACATCACCTTCTTCAGTGATGACAACCCTAATGCTTGCTCTCTCATGTAA 465 0.4817 MGVIRGTLEYSNSNNHHIKMKKKPFQTVELKVRMDCDGCELKVKKALSSLTGVKSVEINRKLQKVTVTGHVEASKVLKKAKATGKRAEMWPYVPYNLVAQPYAAPAYDKRAPPGFVRNVDSSSSSSSIGALVTRYEDPYITFFSDDNPNACSLM 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g1406 154 CDD HMA 29 88 IPR006121 GO:0046872
Lele22g1406 154 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 27 152 IPR045181 GO:0046872
Lele22g1406 154 Pfam Heavy-metal-associated domain 31 85 IPR006121 GO:0046872
Lele22g1406 154 Gene3D - 13 91 - -
Lele22g1406 154 SUPERFAMILY HMA, heavy metal-associated domain 25 91 IPR036163 GO:0046872
Lele22g1406 154 ProSiteProfiles Heavy-metal-associated domain profile. 34 89 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g1406 Lele-ChrLele22 19863014 19863569 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g1406 22 19863014 19863569 Lele22g1406 22 19863014 19863569 ECH
Lele21g1416 21 22634215 22637443 Lele22g1406 22 19863014 19863569 ECH
Lele22g1406 22 19863014 19863569 Lele23g0599 23 4492308 4492857 hybridization
Lele22g1406 22 19863014 19863569 Lele24g1359 24 19649471 19650050 hybridization