Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele22g0625 ATGACAACTGGACAACTGTTCTCCCGCACTACACAAGCATTATTTTACAACTACAAGCAACTTCCTATCCAGCGGATGCTTGACTTTGACTTCCTTTGTGGTTTGTACCAATTCTTTTCATCTTCTAGTAGGGAGACACCATCAGTTGCTGGAATCATTAATCCTGGTTCTGAGGGATTCCAGAAGCTCTTTTTTGGTCAAGATGAAATTGCAATCCCAGTGCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTTGCATCATTTAGGAGTGCCGCTGCTTCGTCCATGGCTGCATTGAAACAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCTGAGTCTGACACCAAACATTTGATTGCATATGCCCAGTCAAACAATAAGGTTGTTATTGGCCCAGCCACCGTTGGAGGTATTCAAGCTGGTGCTTTTAAGATAGGTGATACGGCTGGAACAATTGACAATATAATTCAATGCAAGCTGTACAGGCCTGGATCTGTTGGATTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTGTACAACACTATTGCTCGGGTAACAGATGGAATTTATGAAGGCATTGCGATTGGAGGAGATGTTTTTCCCGGTTCTACACTTTCTGATCATATTTTGCGGCATAACAACATACCCCAAGTTAAAATGATGGTAGTACTTGGGGAATTGGGTGGACGAGATGAGTATTCTTTAGTGGAAGCCCTAAAACATGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTCAGTGGAACCTGTGCACGACTCTTCAAGTCTGAAGTACAATTTGGTCATGCTGGGGCTAAAAGTGGTGGTGAAATGGAGTCTGCTCAAGCGAAGAATCAAGCACTTAGAGAAGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGCTGCAATTAAGGAAACATTTGACAAATTGGTAGAAGAAGGGAAAATCATGCCAGTGACGGAGTTTACTCCTCCAGAGATTCCCGAGGACCTTAATACTGCAATTAGGAATGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCTCTGATGATAGAGGTGAGGAACCATGCTATGCTGGTGTTCCCATGTCTAACATTATTGAAAAAGGTTTGGGTGTAGGCGATGTTATATCTCTCCTGTGGTTTAAACGCAGCCTTCCTCATTATTGCACAAAATTTATCGAGATATGCATCATGCTTTGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATAGTGACAGCGAGGGCAGGGAAGGACCTTATCTCCAGCCTGGTATCAGGTTTGCTTGCAATTGGTCCTCGATTTGGCGGTGCCGTTGATGATGCTGCTCGTTACTTCAAGGATGCTTGTGACAGGAATCTTACACCTTACGAATTTGTTGAAGGCATGAAGAAGAATGGCATCCGTGTGCCAGGAATAGGGCACAGGATCAAGAGCAGAGACAACAGAGATAAGAGAGTAGAGTTGCTACAGAAGTTTGCAAACACTCACTTTCCTTCCGTAAAGTACATGAAATATGCCGTTCGGGTTGAAAACTACACCCTTACAAAGGCAAATAACCTGGTTCTCAACGTAGATGGTGCAATTGGGTCCCTTTTCTTGGATCTTCTTGCTGGCAGTGGGATGTTCACCAATCAAGAGATCGATGAAATTGTCGAGATTGGCTATCTGAATGGGCTATTTGTGCTCGCTCGCTCCATTGGTCTGATTGGGCATACCTTTGACCAGAAGAGATTGAAACAACCCCTGTACCGCCACCCATGGGAGGATATTCTCTACGCCAAGTGA 1854 0.4407 MTTGQLFSRTTQALFYNYKQLPIQRMLDFDFLCGLYQFFSSSSRETPSVAGIINPGSEGFQKLFFGQDEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKHLIAYAQSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRHNNIPQVKMMVVLGELGGRDEYSLVEALKHGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAVVPTSYEAFEAAIKETFDKLVEEGKIMPVTEFTPPEIPEDLNTAIRNGKVRAPTHIISTISDDRGEEPCYAGVPMSNIIEKGLGVGDVISLLWFKRSLPHYCTKFIEICIMLCADHGPCVSGAHNTIVTARAGKDLISSLVSGLLAIGPRFGGAVDDAARYFKDACDRNLTPYEFVEGMKKNGIRVPGIGHRIKSRDNRDKRVELLQKFANTHFPSVKYMKYAVRVENYTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTNQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDILYAK 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele22g0625 617 FunFam ATP-citrate synthase beta chain protein 2 146 - -
Lele22g0625 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 177 202 IPR017866 -
Lele22g0625 617 FunFam ATP-citrate synthase subunit 1 464 557 - -
Lele22g0625 617 Gene3D - 147 332 IPR016102 -
Lele22g0625 617 Gene3D - 2 146 - -
Lele22g0625 617 CDD CCL_ACL-C 378 615 - -
Lele22g0625 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 183 212 IPR033847 -
Lele22g0625 617 Gene3D - 460 561 IPR016143 -
Lele22g0625 617 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 46 145 IPR036291 -
Lele22g0625 617 FunFam ATP-citrate synthase subunit 147 332 - -
Lele22g0625 617 Pfam Citrate synthase, C-terminal domain 408 607 IPR002020 GO:0006099|GO:0046912
Lele22g0625 617 SUPERFAMILY Citrate synthase 143 614 IPR036969 GO:0046912
Lele22g0625 617 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 268 284 IPR017440 -
Lele22g0625 617 PANTHER ATP-CITRATE SYNTHASE 5 616 - -
Lele22g0625 617 Pfam CoA-ligase 182 307 IPR005811 GO:0003824
Lele22g0625 617 Gene3D Citrate Synthase, domain 1 408 607 IPR016142 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele22g0625 Lele-ChrLele22 4143787 4148744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele22g0625 1 617 Acyl Lipid Metabolism Gene Families AT5G49460 90.276 0.0 1121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele22g0625 22 4143787 4148744 Lele22g0625 22 4143787 4148744 ECH
Lele22g0625 22 4143787 4148744 Lele23g1410 23 18861112 18864753 hybridization
Lele22g0625 22 4143787 4148744 Lele24g0627 24 4188163 4194825 hybridization