Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0627 ATGTCTGCTTCTCCCATTTGCGATCTGGAATCTCCGTCCTGCAGTTTTCACAATATGACAACTGGACAACTGTTCTCCCGCACTACACAAGCATTATTTTACAACTACAAGCAACTTCCTATCCAGCGGATGCTTGACTTTGACTTCGTTTGTGGTTTGTACCAATTATTTTCATCTTCTAGTAGGGAGAAACCATCAGTTGCTGGAATCGTTAATCCTGGTTCTGAGGGATTCCAGAAGCTCTTTTTTGGTCAAGATGAAATTGCAATCCCAGTGCATTCTACCATTGAAGCAGCTTGTGCTGCACATCCTACTGCTGATGTCTTCATCAATTTCGCATCATTTAGGAGCGCTGCTGCTTCATCCATGGCTGCATTGAAGCAGCCAACAATTAGAGTTGTTGCTATTATTGCTGAAGGTGTACCTGAGTCTGACACCAAGCATTTGATTGCATATGCCCAGTCAAACAATAAGGTTGTTATTGGCCCAGCCACCGTTGGAGGTATTCAAGCTGGTGCTTTTAAGATAGGTGATACGGCTGGAACAATTGACAATATAATTCAATGCAAGCTGTACAGGCCTGGATCTGTTGGCTTTGTTTCTAAATCTGGTGGGATGTCCAATGAATTGTACAACACTATTGCTCGGGTAACAGATGGAATTTATGAAGGCATTGCGATTGGAGGAGATGTTTTTCCTGGTTCTACACTTTCTGATCATATTTTGCGGCATAACAACATACCTCAAGTTAAAATGATGGTAGTACTAGGGGAATTGGGTGGACGAGATGAGTATTCTTTAGTGGAAGCCCTAAAACATGGGAAAGTGACAAAACCAGTTGTTGCCTGGGTCAGTGGAACCTGTGCACGACTCTTCAAGTCTGAAGTACAATTTGGTCATGCTGGGGCTAAAAGTGGTGGTGAAATGGAGTCTGCTCAAGCGAAGAATCAAGCACTTAGAGAAGCTGGAGCTGTTGTTCCCACTTCATATGAAGCTTTTGAAGCTGCAATTAAGGAAATATTTGACAAATTGTTAGAAGAAGGGAAAATCATGCCAGTGAAGGAGTTTACTCCTCCAGAGATTCCCGAGGACCTTAATACTGCAATTAGGAATGGAAAAGTCCGTGCTCCAACTCATATTATTTCCACCATCTCTGATGATAGAGGTGAGGAACCATGCTATGCTGGAGTTCCCATGTCTAACATTATTGAAAAAGGTTTGGGTGTAGGCGATGTTATATCTCTCCTGTGGTTTAAACGCAGCCTTCCTCATTATTGCACAAAATTTATTGAGATATGCATCATGCTATGTGCCGACCATGGTCCTTGTGTCTCTGGTGCTCACAATACTATAGTGACAGCGAGGGCAGGGAAGGACCTTATCTCCAGCCTGGTATCAGGTTTGCTTGCAATTGGTCCTCGATTTGGCGGTGCCGTTGATGATGCTGCTCGTTACTTCAAGGATGCTTGTGACAGGAATCTTACACCTTACGAATTTGTTGAAGGCATGAAGAAGAATGGCATCCGGGTGCCAGGAATAGGGCACAGGATCAAGAGCAGAGACAACAGAGATAAGAGGGTAGAGTTGCTACAGAAGTTTGCAAACACTCACTTTCCTTCCGTAAAATACATGAAATATGCCGTTCGGGTTGAAAACTGCACTCTTACAAAGGCAAATAACCTGGTTCTCAACGTAGATGGTGCAATTGGGTCCCTTTTCTTGGATCTTCTTGCTGGCAGTGGTATGTTCACCAATCAAGAGATTGATGAAATTGTCGAGATTGGCTATCTGAATGGGCTATTTGTGCTGGCTCGCTCCATTGGTTTGATTGGGCATACCTTTGACCAGAAGAGACTGAAGCAACCCCTGTACCGCCACCCATGGGAGGATATTCTCTACGCCAAGTGA 1908 0.4392 MSASPICDLESPSCSFHNMTTGQLFSRTTQALFYNYKQLPIQRMLDFDFVCGLYQLFSSSSREKPSVAGIVNPGSEGFQKLFFGQDEIAIPVHSTIEAACAAHPTADVFINFASFRSAAASSMAALKQPTIRVVAIIAEGVPESDTKHLIAYAQSNNKVVIGPATVGGIQAGAFKIGDTAGTIDNIIQCKLYRPGSVGFVSKSGGMSNELYNTIARVTDGIYEGIAIGGDVFPGSTLSDHILRHNNIPQVKMMVVLGELGGRDEYSLVEALKHGKVTKPVVAWVSGTCARLFKSEVQFGHAGAKSGGEMESAQAKNQALREAGAVVPTSYEAFEAAIKEIFDKLLEEGKIMPVKEFTPPEIPEDLNTAIRNGKVRAPTHIISTISDDRGEEPCYAGVPMSNIIEKGLGVGDVISLLWFKRSLPHYCTKFIEICIMLCADHGPCVSGAHNTIVTARAGKDLISSLVSGLLAIGPRFGGAVDDAARYFKDACDRNLTPYEFVEGMKKNGIRVPGIGHRIKSRDNRDKRVELLQKFANTHFPSVKYMKYAVRVENCTLTKANNLVLNVDGAIGSLFLDLLAGSGMFTNQEIDEIVEIGYLNGLFVLARSIGLIGHTFDQKRLKQPLYRHPWEDILYAK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0627 635 Gene3D - 165 350 IPR016102 -
Lele24g0627 635 Gene3D - 477 574 IPR016143 -
Lele24g0627 635 FunFam ATP-citrate synthase subunit 165 350 - -
Lele24g0627 635 FunFam ATP-citrate synthase subunit 1 482 575 - -
Lele24g0627 635 Pfam CoA-ligase 200 325 IPR005811 GO:0003824
Lele24g0627 635 FunFam ATP-citrate synthase beta chain protein 20 164 - -
Lele24g0627 635 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 3. 195 220 IPR017866 -
Lele24g0627 635 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 64 163 IPR036291 -
Lele24g0627 635 SUPERFAMILY Citrate synthase 161 632 IPR036969 GO:0046912
Lele24g0627 635 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family active site. 286 302 IPR017440 -
Lele24g0627 635 Pfam Citrate synthase, C-terminal domain 426 625 IPR002020 GO:0006099|GO:0046912
Lele24g0627 635 CDD CCL_ACL-C 396 633 - -
Lele24g0627 635 ProSitePatterns ATP-citrate lyase / succinyl-CoA ligases family signature 1. 201 230 IPR033847 -
Lele24g0627 635 Gene3D - 20 164 - -
Lele24g0627 635 PANTHER ATP-CITRATE SYNTHASE 18 634 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0627 Lele-ChrLele24 4188163 4194825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0627 19 635 Acyl Lipid Metabolism Gene Families AT5G49460 89.465 0.0 1111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0627 24 4188163 4194825 Lele24g0627 24 4188163 4194825 ECH
Lele22g0625 22 4143787 4148744 Lele24g0627 24 4188163 4194825 hybridization