LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele21g1506	ATGAAAGGTGGAACTTTACAAATAAACTGGCATGAAACTAAACCAGTCCTATCCCTTGATTTTCACCCACTCACCGGCACTCTGGCCACTGCTGGCGCCGATTTCGACATCAAGCTTTGGTCTGTAAAACCTGCAGAGTCACAAAAGAAACTACCTGTAGTGTCCTATCTGAATAGCTTGTCTTACCATAGTTCTGCAGTCAATGTAATTCGTTTCTCCTCTTCAGGGGAACTCTTGGCCTCTGGTGCTGACGGAGGTGATCTTATAATATGGAAGTATCATCTGACAGATACAGATCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAGTGGTCTCCTGATGGCACATTTTTAATTTCTGGGTCAGTTGATAATAGTTGCATTATATGGGACGTTAACAAAGTTGATTTTTATGTCTCAGGCACTAATATTCAGACGCTGGATGCCCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGAAATATGTTGCTTCTCTTAGTTCTGACAGAACTTGCCGAATTTACCTTAATAAACCTAAAAAATCTAAAGGAAGTGGGAAAATCAATTATGTCTGCCAGCAAGTTATTTCCAAGGCAGTACATCCATTACTAGATAATTCTAAGTCAACAAATTATCATCTTTTCCATGATGAGACATTGCCGTCTTTTTTCAGAAGACCAGCCTGGTCTCCTGATGGCTCGTTTCTTATTGCGCCTGCAGGCTCATACAAAACTACTCCTGGATCTGAATCTGTAAATGCCGCTTACATATTTTCTAGAAATGATCTCTCTCGGCCTGCCGTACAGCTTCCTTGTGCAAACAAAGCTGTGGTTGCTGTCCGATTCTGCCCTGTTAATTTCAGCCTTCGGGGAACAAATTCAGTTGGGTCATTTAAACTTCCATATCGCCTCATTTTTGCTGTGGCCACTTTGAATTCGTTGTACATTTATGAAACTGAGAACAATCCTCCCATAGCTATATTGGCTGTGGATAGCAGTAAAAATGAAGTTGAAAAACAGCCATTGTGTGAGTTGAAAGAATTCATGCTGTGA	1089	0.416	MKGGTLQINWHETKPVLSLDFHPLTGTLATAGADFDIKLWSVKPAESQKKLPVVSYLNSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKYHLTDTDQTWKVLKMLRSHHKDILDLQWSPDGTFLISGSVDNSCIIWDVNKVDFYVSGTNIQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYLNKPKKSKGSGKINYVCQQVISKAVHPLLDNSKSTNYHLFHDETLPSFFRRPAWSPDGSFLIAPAGSYKTTPGSESVNAAYIFSRNDLSRPAVQLPCANKAVVAVRFCPVNFSLRGTNSVGSFKLPYRLIFAVATLNSLYIYETENNPPIAILAVDSSKNEVEKQPLCELKEFML	362

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele21g1506	362	ProSitePatterns	Trp-Asp (WD) repeats signature.	127	141	IPR019775	-
	Lele21g1506	362	Gene3D	-	4	210	IPR015943	GO:0005515
	Lele21g1506	362	Pfam	WD domain, G-beta repeat	103	140	IPR001680	GO:0005515
	Lele21g1506	362	Pfam	WD domain, G-beta repeat	151	187	IPR001680	GO:0005515
	Lele21g1506	362	Pfam	WD domain, G-beta repeat	11	41	IPR001680	GO:0005515
	Lele21g1506	362	Pfam	WD domain, G-beta repeat	58	92	IPR001680	GO:0005515
	Lele21g1506	362	FunFam	Chromatin assembly factor 1 subunit FAS2	4	256	-	-
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats profile.	60	101	IPR001680	GO:0005515
	Lele21g1506	362	SMART	WD40_4	53	92	IPR001680	GO:0005515
	Lele21g1506	362	SMART	WD40_4	149	188	IPR001680	GO:0005515
	Lele21g1506	362	SMART	WD40_4	101	140	IPR001680	GO:0005515
	Lele21g1506	362	SMART	WD40_4	3	41	IPR001680	GO:0005515
	Lele21g1506	362	PANTHER	CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B	1	340	IPR045145	GO:0006335
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats profile.	108	142	IPR001680	GO:0005515
	Lele21g1506	362	SUPERFAMILY	WD40 repeat-like	9	342	IPR036322	GO:0005515
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats profile.	16	50	IPR001680	GO:0005515
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	60	92	-	-
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats profile.	156	187	IPR001680	GO:0005515
	Lele21g1506	362	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	108	142	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele21g1506	Lele-ChrLele21	23334111	23339982	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele21g1506	28	187	Miscellaneous Gene Families	AT5G08390	27.329	6.09e-13	68.2

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1506	21	23334111	23339982	Lele23g0506	23	3710565	3715711	hybridization
	Lele21g1506	21	23334111	23339982	Lele24g1446	24	20395233	20400306	hybridization