Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g1446 ATGAAGGGTGGAACTTTACAAATAAACTGGCATGAAACCAAACCAGTACTATCCCTTGATTTCCACCCACTCACCGCCACTCTCGCCACCGCTGGCGCCGATTTCGACATCAAGCTTTGGTCTGTAAAACCTGCAGAGGCACAAAAGAAACTACCTGTAGTGTCCTATCTGAATAGCTTGTCTTACCATGGTTCTGCAGTAAATGTAATTCGTTTCTCCTCTTCAGGGGAACTCTTGGCCTCTGGTGCTGATGGAGGTGACCTTATAATATGGAAGTATCATCTGACAGATACAGATCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAGTGGTCTCCTGATGGCTCATTTTTAATTTCTGGGTCAGTTGATAATAGTTGCATTATATGGGACATTAACAAAGGAACCAATCTTCAGACGTTGGATGCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGCAATATGTTGCTTCTCTTAGTTCTGACAGAACTTGCCGAATTTACTTTAATAAACCTAAAAAATCTAAAGGAAGTGGGAAAATCAATTATGTCTGCCAGCAAGTTATTTCCAAGGCAGTACATCCATTACTAGATAATTCTAAGTCAACAAATCATCACCTTTTCCATGATGAGACACTGCCATCATTTTTCCGAAGACTAGCCTGGTCTCCTGATGGCTCGTTTCTTCTTGTGCCTGCAGGCTCATACAAAATTGCGTCTGGATCTGAATCCTTAAATGCAGCTTACATATTTTCTAGAAATGATCTCTCTCGGCCTGCCATACAGCTTCCTTGTGCAAACAAAGCTGTGGTTGCTGTCCGATTCTGCCCTGTTAATTTCAGCCTTCGGGGAACAAATTCAGTTGTAGTGGATAGCAGTAAACAGCCAGTAAGTTCAGATAGCGTGAAATTAGATGAGCAAGACAAGACTGAAAAACATCCATCTGGTTTGGATGTTGTAAGAAAAGAAGCTGAAGAGAAGACACAGAAACAAACATCTGGTGTGAATAAAAAGGAAGCAGAAGAAAGGGTAGCATGTAGTTCCAGGGGAACGCCAACATCAAATAAGACCGGCAAAAAGCGCATAACTCCAATTGCCATTGGTCCATGA 1149 0.4247 MKGGTLQINWHETKPVLSLDFHPLTATLATAGADFDIKLWSVKPAEAQKKLPVVSYLNSLSYHGSAVNVIRFSSSGELLASGADGGDLIIWKYHLTDTDQTWKVLKMLRSHHKDILDLQWSPDGSFLISGSVDNSCIIWDINKGTNLQTLDAHAHYVQGVAWDPLGQYVASLSSDRTCRIYFNKPKKSKGSGKINYVCQQVISKAVHPLLDNSKSTNHHLFHDETLPSFFRRLAWSPDGSFLLVPAGSYKIASGSESLNAAYIFSRNDLSRPAIQLPCANKAVVAVRFCPVNFSLRGTNSVVVDSSKQPVSSDSVKLDEQDKTEKHPSGLDVVRKEAEEKTQKQTSGVNKKEAEERVACSSRGTPTSNKTGKKRITPIAIGP 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 60 101 IPR001680 GO:0005515
Lele24g1446 382 ProSitePatterns Trp-Asp (WD) repeats signature. 127 141 IPR019775 -
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 16 50 IPR001680 GO:0005515
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 150 181 IPR001680 GO:0005515
Lele24g1446 382 Pfam WD domain, G-beta repeat 103 140 IPR001680 GO:0005515
Lele24g1446 382 Pfam WD domain, G-beta repeat 144 181 IPR001680 GO:0005515
Lele24g1446 382 Pfam WD domain, G-beta repeat 58 92 IPR001680 GO:0005515
Lele24g1446 382 Pfam WD domain, G-beta repeat 11 41 IPR001680 GO:0005515
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats profile. 108 149 IPR001680 GO:0005515
Lele24g1446 382 MobiDBLite consensus disorder prediction 304 382 - -
Lele24g1446 382 PRINTS Beta G protein (transducin) signature 108 124 IPR001632 -
Lele24g1446 382 PRINTS Beta G protein (transducin) signature 164 181 IPR001632 -
Lele24g1446 382 PRINTS Beta G protein (transducin) signature 127 141 IPR001632 -
Lele24g1446 382 SMART WD40_4 53 92 IPR001680 GO:0005515
Lele24g1446 382 SMART WD40_4 3 41 IPR001680 GO:0005515
Lele24g1446 382 SMART WD40_4 101 140 IPR001680 GO:0005515
Lele24g1446 382 SMART WD40_4 143 182 IPR001680 GO:0005515
Lele24g1446 382 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 313 IPR045145 GO:0006335
Lele24g1446 382 Gene3D - 4 247 IPR015943 GO:0005515
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 60 92 - -
Lele24g1446 382 SUPERFAMILY WD40 repeat-like 9 290 IPR036322 GO:0005515
Lele24g1446 382 MobiDBLite consensus disorder prediction 314 358 - -
Lele24g1446 382 FunFam Chromatin assembly factor 1 subunit FAS2 4 250 - -
Lele24g1446 382 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 108 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g1446 Lele-ChrLele24 20395233 20400306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g1446 28 181 Miscellaneous Gene Families AT5G08390 27.273 1.49e-14 73.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1506 21 23334111 23339982 Lele24g1446 24 20395233 20400306 hybridization
Lele22g1495 22 20679096 20684239 Lele24g1446 24 20395233 20400306 hybridization