Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g0506 ATGAAAGGTGGAACTTTACAAATAAACTGGCATGAAACTAAACCAGTCCTATCCCTTGATTTTCACCCACTCTCCGGCACTCTCGCCACTGCCGGCGCCGATTTCGACATCAAGGCTAGACTAACTATTGGTTGTAACTTGTATTTCCAGCTTTGGTCTGTAAAACCTGCAGAGGCACAAAAGAAACTACCTGTAGTGTCCTATCTGCATAGCTTGTCTTACCATAGTTCTGCAGTAAATGTAATTCGTTTCTCCTCTTCAGGGGAACTCTTGGCCTCTGGTGCTGACGGAGGTGACCTTATAATATGGAAGTATCATCTGACAGATACAGATCAGACATGGAAGGTCCTCAAGATGTTAAGGTCTCATCACAAGGACATTCTGGACCTTCAGTGGTCTCCTGATGGCGCATTTTTAATTTCTGGGTCAGTTGATAATAGTTGCATTATATGGGACATTAACAAAGGCACTAATCTTCAGACGCTGGATGCTCATGCCCATTATGTTCAAGGAGTTGCATGGGATCCTCTAGGGAAATATGTTGCTTCTCTTAGTTCTGACAGAACTTGCCGAATTTACCTTAATAAACCTAAAAAATCTAAAGGAAGTGGGAAAATCAATTATGTCTGCCAGCAAGTTATTTCCAAGGCAGTACATCCATTACTAGATAATTCTAAGTCAACAAATTATCATCTTTTCCATGATGAGACACTGCCATCTTTTTTCAGAAGACCAGCCTGGTCTCCTGATGGCTCGTTTCTTATTGTGCCTGCAGGCTCATACAAAACTACTCCTGGATCTGAATCTGTAAATGCAGCTTACATATTTTCTAGAAATGATCTCTCTCGGCCTGCCATACAGCTTCCTTGTGCAAACAAAGCAGTGGTTGCTGTCCGATTCTGCCCTGTTAATTTCAGCCTTCGGGGAACAAATTCAGCTGGGTCATTTAAACTTCCCTATCGCCTCATTTTTGCTGTGGCCACTTTGAATTCGTTGTACATATATGAAACTGAGAACAATCCTCCCATAGCTATATTGGCTGTGGATAGCAGTAAAAATGAAGTTGAAAAACAGCCAGTAAGTTCAGATGGTGTGAAATCAGATGAGCAAGACAAGATTGAAAAACATCCATCTGCTTTGGATGTTGTAAGAAAAGAAGCTGAAGAGAAGAGAGAGAAACAAACATCTAGTTTGGATAAAAGGGAAGCAGAAGAAAGGGTAGCATGTAGTTCAAGGGGAACAACATCAAATAAGACAGGCAGAAAGCGTATAACTCCCATTGCGATTGATCCATGA 1296 0.4151 MKGGTLQINWHETKPVLSLDFHPLSGTLATAGADFDIKARLTIGCNLYFQLWSVKPAEAQKKLPVVSYLHSLSYHSSAVNVIRFSSSGELLASGADGGDLIIWKYHLTDTDQTWKVLKMLRSHHKDILDLQWSPDGAFLISGSVDNSCIIWDINKGTNLQTLDAHAHYVQGVAWDPLGKYVASLSSDRTCRIYLNKPKKSKGSGKINYVCQQVISKAVHPLLDNSKSTNYHLFHDETLPSFFRRPAWSPDGSFLIVPAGSYKTTPGSESVNAAYIFSRNDLSRPAIQLPCANKAVVAVRFCPVNFSLRGTNSAGSFKLPYRLIFAVATLNSLYIYETENNPPIAILAVDSSKNEVEKQPVSSDGVKSDEQDKIEKHPSALDVVRKEAEEKREKQTSSLDKREAEERVACSSRGTTSNKTGRKRITPIAIDP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g0506 431 Coils Coil 384 404 - -
Lele23g0506 431 MobiDBLite consensus disorder prediction 359 408 - -
Lele23g0506 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 72 104 - -
Lele23g0506 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 72 113 IPR001680 GO:0005515
Lele23g0506 431 SUPERFAMILY WD40 repeat-like 10 350 IPR036322 GO:0005515
Lele23g0506 431 Pfam WD domain, G-beta repeat 115 152 IPR001680 GO:0005515
Lele23g0506 431 Pfam WD domain, G-beta repeat 69 104 IPR001680 GO:0005515
Lele23g0506 431 Pfam WD domain, G-beta repeat 156 193 IPR001680 GO:0005515
Lele23g0506 431 FunFam Chromatin assembly factor 1 subunit FAS2 4 262 - -
Lele23g0506 431 PRINTS Beta G protein (transducin) signature 139 153 IPR001632 -
Lele23g0506 431 PRINTS Beta G protein (transducin) signature 120 136 IPR001632 -
Lele23g0506 431 PRINTS Beta G protein (transducin) signature 176 193 IPR001632 -
Lele23g0506 431 MobiDBLite consensus disorder prediction 356 431 - -
Lele23g0506 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 120 161 IPR001680 GO:0005515
Lele23g0506 431 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 120 156 - -
Lele23g0506 431 ProSitePatterns Trp-Asp (WD) repeats signature. 139 153 IPR019775 -
Lele23g0506 431 PANTHER CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B 1 346 IPR045145 GO:0006335
Lele23g0506 431 SMART WD40_4 3 41 IPR001680 GO:0005515
Lele23g0506 431 SMART WD40_4 113 152 IPR001680 GO:0005515
Lele23g0506 431 SMART WD40_4 65 104 IPR001680 GO:0005515
Lele23g0506 431 SMART WD40_4 155 194 IPR001680 GO:0005515
Lele23g0506 431 Gene3D - 4 212 IPR015943 GO:0005515
Lele23g0506 431 ProSiteProfiles Trp-Asp (WD) repeats profile. 162 193 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g0506 Lele-ChrLele23 3710565 3715711 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele23g0506 41 193 Miscellaneous Gene Families AT5G08390 26.797 7.64e-13 68.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1506 21 23334111 23339982 Lele23g0506 23 3710565 3715711 hybridization
Lele22g1495 22 20679096 20684239 Lele23g0506 23 3710565 3715711 hybridization