Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0595 ATGAGCAGACCGACGTGCGAACTCAGCACGTTTTGGTCTGATCCTGATACAGAACTGAAGTTGGCCAAAGATACTGGTGTTACAGTCTTTCGAATGGGTATAGATTGGTCAAGAATAATGCCAAAGGAGCCTGTAAATGGGCTAAACCAATCTGTGAGTCTCGGAATGGTCAATTATGCCGCTTTGGAGCGTTATAAGTGGATTATCAATAGGGTTAGATCATATGGAATGAAGGTCATGCTCACTCTTTTTCATCACTCACTACCACCTTGGGCTGGTGAGTATGGAGGTTGGAAGCTGGAAAAGACTGTTGATTATTTCATGGACTTTACCAGAACACCCACTGCACTGTGCCAGCCTCTCCTTGGTTTTATTTATCTTATGGTAGCATATGAAATGATGCTTTTCCTCATAGCTTACATTCCATGGTGCAGGCTTGTTGTAAACAGTGTATCTGATCTGGTTGAATATTGGGTTACTTTTAATGAACCTCATGTCTTCTGTATGCTTACTTATTGTGCTGGAGCTTGGCCTGGTGGTAATCCTGATATGCTGGAGGTTGCTACTTCGGCTCTTCCAACTGGTGTTTTCCAACAGGCCATGCATTGGATGGCTATTGCACACTCAAAAGCATATGATTATATCCATGAACAAAGTGTCTCATTAAAACCCATAGTCGGTGTAGCACACCATGTGTCATTCATGCGACCCTATGGATTGTTTGATGTTGCTGCTGTTTCACTGGCTAATTCCTTGACCATCTTCCCGTACATTGATAGTATTTCTGACAAGCTGGATTTTATAGGCCTAAACTACTATGGGCAGGAAGTTGTTTCTGGTGCGGGACTGAAACTTGTGGAAACAGATGAGTACAGTGAATCTGGTCGTGGGGTATATCCTGATGGCTTGTATCGCATGTTGCTTAAGTTTCATGAAAGATACAAACATCTTAATGTTCCCTTCATCATTACTGAAAACGGAGTATCTGATGAGACAGATCTAATCCGACGGCCATATCTGTTGGAACATTTGCTTGCTGTATATGCAGCCAGGATAATGGGTGTTCCTGTGCTTGGTTACCTGTTTTGGACTATTTCTGATAACTGGGAGTGGGCTGATGGATATGGTCCCAAGTTTGGACTTGTAGCAGTTGACCGAGCTAATAATCTTGCACGCAACCCACGCCCTTCTTACCACCTATTTTCTAAAGTTAGAACTCTATTTCTATAG 1230 0.4276 MSRPTCELSTFWSDPDTELKLAKDTGVTVFRMGIDWSRIMPKEPVNGLNQSVSLGMVNYAALERYKWIINRVRSYGMKVMLTLFHHSLPPWAGEYGGWKLEKTVDYFMDFTRTPTALCQPLLGFIYLMVAYEMMLFLIAYIPWCRLVVNSVSDLVEYWVTFNEPHVFCMLTYCAGAWPGGNPDMLEVATSALPTGVFQQAMHWMAIAHSKAYDYIHEQSVSLKPIVGVAHHVSFMRPYGLFDVAAVSLANSLTIFPYIDSISDKLDFIGLNYYGQEVVSGAGLKLVETDEYSESGRGVYPDGLYRMLLKFHERYKHLNVPFIITENGVSDETDLIRRPYLLEHLLAVYAARIMGVPVLGYLFWTISDNWEWADGYGPKFGLVAVDRANNLARNPRPSYHLFSKVRTLFL 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0595 409 Pfam Glycosyl hydrolase family 1 259 404 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 Pfam Glycosyl hydrolase family 1 16 113 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 Pfam Glycosyl hydrolase family 1 140 239 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 ProSitePatterns Glycosyl hydrolases family 1 active site. 321 329 IPR018120 -
Lele21g0595 409 Gene3D Glycosidases 2 118 - -
Lele21g0595 409 SUPERFAMILY (Trans)glycosidases 12 405 IPR017853 -
Lele21g0595 409 Gene3D Glycosidases 136 407 - -
Lele21g0595 409 PANTHER GLYCOSYL HYDROLASE 261 404 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 PRINTS Glycosyl hydrolase family 1 signature 321 329 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 PRINTS Glycosyl hydrolase family 1 signature 264 278 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 PRINTS Glycosyl hydrolase family 1 signature 378 390 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 PRINTS Glycosyl hydrolase family 1 signature 333 344 IPR001360 GO:0004553|GO:0005975
Lele21g0595 409 PRINTS Glycosyl hydrolase family 1 signature 354 371 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0595 Lele-ChrLele21 4021875 4024975 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0595 11 404 Glycoside Hydrolase AT3G06510 65.654 0.0 576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0595 21 4021875 4024975 Lele21g0595 21 4021875 4024975 ECH
Lele21g0595 21 4021875 4024975 Lele23g1444 23 19082483 19087063 hybridization
Lele21g0595 21 4021875 4024975 Lele24g0596 24 4003173 4005318 hybridization