Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0583 ATGCAAGATCCTTCGATTCCGAAGACCTCTAGCATCTTGCCGTGCCGATCGGGTTGGATTATAGAAATGCAAATCAGAAAGGGAAAAAGAGGAATGGAGAAGGAAGAAGACCATGGAATGAAAGAAGAACATGGGAACCTTATCTGGGTGACGAAGCAGACCTCTCCGAAGCAAAGCGAGGAAGGAGAGACGTCCGACACGGCGATGTCTCTGGCTCAGCAATTCACCGGCCTCCGGTGCTGCTCTCCTCTCTCTTCTTCTCCTCTTTCTAAGCCCTTCTCTGCTCCCACCACCCATAAGCGCAATCCCCTTCCCATTGTCGCCTCCGTCGCCATCTCTAATGCGCAGACCAAAGAGAGGCAAAAGCTCAAACAGCTCTTCGAGGAAGCCTACGAACGCTGTCGCACTGCTCCCATGGAAGGCGTTTCCTTCACTCTGGAAAACTTTAATTCCGCCCTGGATAAGTATGACTTCGATTCTGAAATTGGCACTAAGGTTAAAGGCACCGTTTTCAACGTAGATGCTAATGGAGCTCTTGTTGACATAACTGCAAAGTCGTCAGCATACTTGCCTCTCCAAGAGGCATGTATCCACAGAATTAAACATGTACAAGAAGCAGGCATAGTTCCTGGTTTGAGAGAGGAGTTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTGATCTTGAGTTTAAGGAGTCTCCAATATGACCTTGCTTGGGAACGCTGTAGACAACTCCAAGGAGAAGATGTTGTTGTCAAGGGTAAGATTGTCGGTGCCAACAAAGGTGGAGTTGTGGCTTTGGTTGAAGGCCTTAGAGGGTTTGTTCCTTTCTCACAAATATCATCGAAATCAACTGCAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTGAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTATTCTCAGTAATCGCAAGGCCATGGCTGACAGCCAGGCACAGCTAGGCATTGGATCAGTGGTCACTGGCTCTGTTCAAAGTCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCATGTCAGTCAGATCAGTCATGATCGGGTAACTGACATCTCAACTGTTCTTCAACCTGGTGACACTCTCAAGGTGATGATCTTATCTCATGATCGGGAGAGAGGTCGAGTAAGTCTCTCCACGAAGAAGTTAGAACCCACACCAGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCTCAAACATTTAGACAGAGAATTGCCCAAGCTGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGTGATGGGATATTAGGACCACTTTCTTCTGACTTACCTGCTGAGGGACTGGATCTGAGTGAAGTGCCCCCTGCCGACGAATCAGAAACAGAATAA 1446 0.4751 MQDPSIPKTSSILPCRSGWIIEMQIRKGKRGMEKEEDHGMKEEHGNLIWVTKQTSPKQSEEGETSDTAMSLAQQFTGLRCCSPLSSSPLSKPFSAPTTHKRNPLPIVASVAISNAQTKERQKLKQLFEEAYERCRTAPMEGVSFTLENFNSALDKYDFDSEIGTKVKGTVFNVDANGALVDITAKSSAYLPLQEACIHRIKHVQEAGIVPGLREEFVIIGENEADDSLILSLRSLQYDLAWERCRQLQGEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSTAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSSDLPAEGLDLSEVPPADESETE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0583 481 MobiDBLite consensus disorder prediction 450 481 - -
Lele21g0583 481 Gene3D - 146 243 IPR012340 -
Lele21g0583 481 Pfam S1 RNA binding domain 251 313 IPR003029 GO:0003676
Lele21g0583 481 Pfam S1 RNA binding domain 327 396 IPR003029 GO:0003676
Lele21g0583 481 ProSiteProfiles S1 domain profile. 328 396 IPR003029 GO:0003676
Lele21g0583 481 SUPERFAMILY Nucleic acid-binding proteins 246 319 IPR012340 -
Lele21g0583 481 SUPERFAMILY Nucleic acid-binding proteins 327 406 IPR012340 -
Lele21g0583 481 CDD S1_RPS1_repeat_ec2_hs2 251 315 - -
Lele21g0583 481 Coils Coil 413 433 - -
Lele21g0583 481 Gene3D - 244 321 IPR012340 -
Lele21g0583 481 ProSiteProfiles S1 domain profile. 251 315 IPR003029 GO:0003676
Lele21g0583 481 FunFam 30S ribosomal protein S1 324 403 - -
Lele21g0583 481 Gene3D - 322 400 IPR012340 -
Lele21g0583 481 SUPERFAMILY Nucleic acid-binding proteins 158 258 IPR012340 -
Lele21g0583 481 SMART S1_6 161 233 IPR022967 -
Lele21g0583 481 SMART S1_6 326 396 IPR022967 -
Lele21g0583 481 SMART S1_6 249 315 IPR022967 -
Lele21g0583 481 PRINTS Ribosomal protein S1 signature 254 270 IPR035104 -
Lele21g0583 481 PRINTS Ribosomal protein S1 signature 163 181 IPR035104 -
Lele21g0583 481 PRINTS Ribosomal protein S1 signature 181 195 IPR035104 -
Lele21g0583 481 PRINTS Ribosomal protein S1 signature 272 289 IPR035104 -
Lele21g0583 481 ProSiteProfiles S1 domain profile. 163 233 IPR003029 GO:0003676
Lele21g0583 481 FunFam 30S ribosomal protein S1, chloroplastic 245 321 - -
Lele21g0583 481 FunFam 30S ribosomal protein S1 147 244 - -
Lele21g0583 481 CDD S1_RPS1_repeat_ec1_hs1 163 233 - -
Lele21g0583 481 PANTHER 30S RIBOSOMAL PROTEIN S1 73 466 - -
Lele21g0583 481 CDD S1_RPS1_repeat_hs4 328 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0583 Lele-ChrLele21 3915524 3921649 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0583 21 3915524 3921649 Lele21g0583 21 3915524 3921649 ECH
Lele21g0583 21 3915524 3921649 Lele23g1454 23 19182563 19187938 hybridization
Lele21g0583 21 3915524 3921649 Lele24g0583 24 3898098 3902195 hybridization