Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele23g1454 ATGCAAAGCGAGGAAGGAGGGACGTCCGACATGGCGATGTCTCTGGGTCAGCAATTCACCTGCCTCCGGTGCTGCTCTCCTCCCTCTTCTTCTCCTCGCTCTAAGCCCTTTTCTGCTCCCACCACCCATAAGCGCAATCCCCTTCCCATTGTCGCCTCCGTCGCCATCTCTAATGCGCAGACCAAAGAGAGGCAAAAGCTCAAACAGCTCTTCGAGGAAGCCTACGAGCGCTGTCGCACTGCTCCCATGGAAGGCGTTTCCTTCACTCCCGAAGACTTCAATTCCGCCCTCGATAAGTATGACTTCGATTCTGAAATTGGCACTAAGGTTAAAGGCACCGTTTTCAATGTAGATGCTAATGGAGCTCTTGTTGACATAACTGCAAAGTCGTCAGCATACTTGCCTCTCCAAGAGGCATGTATCCACAGAATTAAACATGTACAAGAAGCAGGCATAGTTCCTGGTTTGAGAGAGGAGTTTGTAATCATTGGTGAAAACGAAGCTGATGATAGCTTGATCTTGAGTTTAAGGAGTCTCCAATATGACCTTGCTTGGGAACGCTGTAGACAACTCCAAGCAGAAGATGTTGTTGTCAAGGGTAAGATTGTCGGTGCCAACAAAGGTGGAGTTGTGGCTTTGGTTGAAGGCCTTAGAGGGTTTGTTCCTTTCTCACAAATATCATCGAAATCAACTGCAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTGAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGGCTTATTCTCAGTAATCGCAAGGCCATGGCTGACAGCCAGGCACAGCTAGGCATTGGATCAGTGGTCACTGGCTCTGTTCAAAGTCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTCCTTCATGTCAGTCAGATCAGTCATGATCGGGTAACTGACATCTCAACTGTTCTTCAACCTGGTGACACTCTCAAGGTGATGATCTTATCTCATGATCGGGAGAGAGGCCGAGTAAGTCTCTCCACAAAGAAGTTAGAACCCACACCAGGAGACATGATTCGCAATCCAAAGCTTGTTTTTGAGAAGGCTGAGGAGATGGCTCAAACATTTAGACAGAGAATTGCCCAAGCTGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGTGATGGGATATTAGGACCACTTTCTTCTGACTTACCTGCTGAGGGACTGGATCTGAGTGAAGTGCCCCCTGCCGACGAATCAGAAACAGAATAA 1278 0.4804 MQSEEGGTSDMAMSLGQQFTCLRCCSPPSSSPRSKPFSAPTTHKRNPLPIVASVAISNAQTKERQKLKQLFEEAYERCRTAPMEGVSFTPEDFNSALDKYDFDSEIGTKVKGTVFNVDANGALVDITAKSSAYLPLQEACIHRIKHVQEAGIVPGLREEFVIIGENEADDSLILSLRSLQYDLAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSTAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLSSDLPAEGLDLSEVPPADESETE 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele23g1454 425 MobiDBLite consensus disorder prediction 394 425 - -
Lele23g1454 425 FunFam 30S ribosomal protein S1 91 188 - -
Lele23g1454 425 FunFam 30S ribosomal protein S1, chloroplastic 189 265 - -
Lele23g1454 425 SUPERFAMILY Nucleic acid-binding proteins 190 263 IPR012340 -
Lele23g1454 425 CDD S1_RPS1_repeat_ec1_hs1 107 177 - -
Lele23g1454 425 ProSiteProfiles S1 domain profile. 195 259 IPR003029 GO:0003676
Lele23g1454 425 ProSiteProfiles S1 domain profile. 272 340 IPR003029 GO:0003676
Lele23g1454 425 Gene3D - 188 266 IPR012340 -
Lele23g1454 425 PANTHER 30S RIBOSOMAL PROTEIN S1 62 410 - -
Lele23g1454 425 SUPERFAMILY Nucleic acid-binding proteins 99 202 IPR012340 -
Lele23g1454 425 Coils Coil 357 377 - -
Lele23g1454 425 CDD S1_RPS1_repeat_ec2_hs2 195 259 - -
Lele23g1454 425 Pfam S1 RNA binding domain 193 257 IPR003029 GO:0003676
Lele23g1454 425 Pfam S1 RNA binding domain 271 340 IPR003029 GO:0003676
Lele23g1454 425 ProSiteProfiles S1 domain profile. 107 177 IPR003029 GO:0003676
Lele23g1454 425 Gene3D - 91 187 IPR012340 -
Lele23g1454 425 PRINTS Ribosomal protein S1 signature 107 125 IPR035104 -
Lele23g1454 425 PRINTS Ribosomal protein S1 signature 125 139 IPR035104 -
Lele23g1454 425 PRINTS Ribosomal protein S1 signature 198 214 IPR035104 -
Lele23g1454 425 PRINTS Ribosomal protein S1 signature 216 233 IPR035104 -
Lele23g1454 425 SUPERFAMILY Nucleic acid-binding proteins 271 350 IPR012340 -
Lele23g1454 425 CDD S1_RPS1_repeat_hs4 272 340 - -
Lele23g1454 425 SMART S1_6 105 177 IPR022967 -
Lele23g1454 425 SMART S1_6 270 340 IPR022967 -
Lele23g1454 425 SMART S1_6 193 259 IPR022967 -
Lele23g1454 425 FunFam 30S ribosomal protein S1 268 347 - -
Lele23g1454 425 Gene3D - 267 344 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele23g1454 Lele-ChrLele23 19182563 19187938 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele23g1454 23 19182563 19187938 Lele23g1454 23 19182563 19187938 ECH
Lele21g0583 21 3915524 3921649 Lele23g1454 23 19182563 19187938 hybridization
Lele22g0594 22 3889901 3894051 Lele23g1454 23 19182563 19187938 hybridization