Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0583 ATGAGGAATAGCATAGAAGGAGCCTTATCTGTGTGGCCAAGCACACACTATCCGAAGCAAAGCGAGGAAGGAGAGACGTCCGACATGGCCATGTCTCTGGCTCAGCAATTCACCGGCCTCCGCTGCTGCTCTCCTCTTTCTTCTTCTCCTCGCTCCAAGCCTTTCTCTGCTCCCACCACCCATAAGCGCAGCCCTGTTCGCATTGTCGCCTCCGTCGCTATCTCTAATGCCCAGACCAGAGAGAGGCAAAAGCTCAAACAGCTCTTCGAGGAAGCCTACGAGCGCTGTCGCACTGCTCCCATGGAAGGCGTTTCCTTCACTCTCGAAGACTTTGATTCCGCCCTCGATAAGTATGACTTCGATTCTGAAATTGGCACCAAGGTTAAAGGCACTGTTTTCAATGTAGATGCTAATGGAGCTCTTGTTGACATAACTGCAAAGTCGTCAGCATACTTGCCTCTCCAAGAGGCATGCATCCACAGAATTAAACATGTGCAAGAAGCAGGCATAGTTCCTGGCTTGAGAGAGGAGTTTGTAATCATTGGTGAAAATGAAGCTGATGATAGCTTGATCTTGAGCTTAAGGAGTCTCCAATATGACCTTGCTTGGGAACGCTGTAGACAACTTCAAGCTGAAGATGTTGTTGTCAAGGGTAAGATTGTCGGTGCCAACAAAGGTGGAGTTGTGGCTTTGGTTGAAGGCCTTAGAGGGTTTGTTCCTTTCTCACAAATATCATCGAAATCAACTGCAGAAGAGCTTCTTGAGAAGGAGCTTCCTCTGAAGTTTGTGGAGGTGGATGAGGAACAGTCTAGACTTATTCTCAGTAACCGCAAGGCCATGGCTGACAGCCAGGCACAGCTAGGCATCGGATCAGTGGTCACTGGCTCTGTTCAAAGTCTAAAGCCATATGGTGCCTTCATTGACATTGGTGGAATTAATGGCCTTCTTCATGTCAGTCAGATCAGTCATGACCGGGTAACTGATATCTCAACTGTTCTTCAACCCGGTGATACTCTCAAGGTGATGATCTTAAGCCATGATCGGGAGAGAGGCCGAGTAAGTCTCTCGACAAAGAAGTTAGAACCCACACCAGGAGACATGATTCGCAATCCAAAGCTTGTCTTTGAGAAGGCTGAGGAGATGGCTCAAACATTCAGACAGAGAATCGCCCAAGCTGAAGCTATGGCTCGTGCAGACATGCTTAGGTTCCAGCCTGAGAGTGGATTAACTCTCAGCAGCGATGGGATATTGGGGCCACTTACTTCAGACTTGCCTGCAGAGGGACTGGATCTGAGTGAAGTGCCCCGTGCCGACGAATCAGAAACAGAATAA 1332 0.4872 MRNSIEGALSVWPSTHYPKQSEEGETSDMAMSLAQQFTGLRCCSPLSSSPRSKPFSAPTTHKRSPVRIVASVAISNAQTRERQKLKQLFEEAYERCRTAPMEGVSFTLEDFDSALDKYDFDSEIGTKVKGTVFNVDANGALVDITAKSSAYLPLQEACIHRIKHVQEAGIVPGLREEFVIIGENEADDSLILSLRSLQYDLAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSTAEELLEKELPLKFVEVDEEQSRLILSNRKAMADSQAQLGIGSVVTGSVQSLKPYGAFIDIGGINGLLHVSQISHDRVTDISTVLQPGDTLKVMILSHDRERGRVSLSTKKLEPTPGDMIRNPKLVFEKAEEMAQTFRQRIAQAEAMARADMLRFQPESGLTLSSDGILGPLTSDLPAEGLDLSEVPRADESETE 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0583 443 Pfam S1 RNA binding domain 211 275 IPR003029 GO:0003676
Lele24g0583 443 Pfam S1 RNA binding domain 289 358 IPR003029 GO:0003676
Lele24g0583 443 PRINTS Ribosomal protein S1 signature 125 143 IPR035104 -
Lele24g0583 443 PRINTS Ribosomal protein S1 signature 216 232 IPR035104 -
Lele24g0583 443 PRINTS Ribosomal protein S1 signature 143 157 IPR035104 -
Lele24g0583 443 PRINTS Ribosomal protein S1 signature 234 251 IPR035104 -
Lele24g0583 443 PANTHER 30S RIBOSOMAL PROTEIN S1 77 428 - -
Lele24g0583 443 FunFam 30S ribosomal protein S1, chloroplastic 207 283 - -
Lele24g0583 443 Gene3D - 206 284 IPR012340 -
Lele24g0583 443 SMART S1_6 211 277 IPR022967 -
Lele24g0583 443 SMART S1_6 288 358 IPR022967 -
Lele24g0583 443 SMART S1_6 123 195 IPR022967 -
Lele24g0583 443 Gene3D - 285 362 IPR012340 -
Lele24g0583 443 SUPERFAMILY Nucleic acid-binding proteins 289 368 IPR012340 -
Lele24g0583 443 CDD S1_RPS1_repeat_hs4 290 358 - -
Lele24g0583 443 ProSiteProfiles S1 domain profile. 290 358 IPR003029 GO:0003676
Lele24g0583 443 CDD S1_RPS1_repeat_ec1_hs1 125 195 - -
Lele24g0583 443 MobiDBLite consensus disorder prediction 412 443 - -
Lele24g0583 443 ProSiteProfiles S1 domain profile. 213 277 IPR003029 GO:0003676
Lele24g0583 443 SUPERFAMILY Nucleic acid-binding proteins 120 220 IPR012340 -
Lele24g0583 443 FunFam 30S ribosomal protein S1 286 365 - -
Lele24g0583 443 ProSiteProfiles S1 domain profile. 125 195 IPR003029 GO:0003676
Lele24g0583 443 Coils Coil 375 395 - -
Lele24g0583 443 FunFam 30S ribosomal protein S1 109 206 - -
Lele24g0583 443 Gene3D - 108 205 IPR012340 -
Lele24g0583 443 CDD S1_RPS1_repeat_ec2_hs2 213 277 - -
Lele24g0583 443 SUPERFAMILY Nucleic acid-binding proteins 208 281 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0583 Lele-ChrLele24 3898098 3902195 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele24g0583 24 3898098 3902195 Lele24g0583 24 3898098 3902195 ECH
Lele21g0583 21 3915524 3921649 Lele24g0583 24 3898098 3902195 hybridization
Lele22g0594 22 3889901 3894051 Lele24g0583 24 3898098 3902195 hybridization