Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele21g0052 ATGGATTTACCCCATCGTCCTCCACTCTCTTCCTGCTCCCTCCTCCTCTTTCTTCTTCTTATTCCTCAGTTCGCTTCCTCTGATTTGGCCAAGGACCGGCAAGAGTGCGCCGAACAACTCGTCGGCCTCGCTCCCTGTCTCGCTTACGTCAACGGCGAGGCCAAAACTCCCACCATCGATTGCTGTACCGGTCTCAAACAGGTCATCGACAAGAGCAAGAAATGCCTCTGCCTCCTCATCAAATACCGCAACGAACCCGACCTCGGCGTCACCCTCAACGCCTCTCTCGCCGTCAACCTTCCCTCTGCCTGTCACGCCCCCGCCAACATCTCTCAGTGCATCGATCTTTTGCATCTGGCTCCTAATTCTTCCGAGGCGAAGGTGTACGAGGGCTTCGATAAAGGCTCTCGCACTAACACTTCCAGTTCCACTTCTAGTTCCACCACAGTCGCGCCTACTGGGAAGGGATCGAGCCCCAGTACGAGTGCTGATGAGAAGAACGGAGGCGTCTCTGCGTCTGTTTGGGAAAAAAGTTGGCACGAAATCGAAGGCTTAGCCCCCTCGCGCTCACGCCGACAGCTCCTCTTCCAGCCTCCGCTGTCGAAGGTCGAAGTCGCTTCCTCCACTGTCGCCGTCGTCGAAGACGAAGGAAAGATGGGGGTCCAGGCTAAGAAAGCAATGAAGAAGAGTCTGAAAAAGGCCACAGCTAAAGTGTCTGTTTCGAGCAAGAAAACAGAGGGTGACTTCTTGCCCTTGGAAGGTGGCCCTGCACGCAAACTTCCTGAACATAAATCGCCAGAGAACACAGCCACTGTTCTATATATTGGTCGGATACCACATGGGTTCTATGAGAAGGAGATGGAAGGTTTTTTTGGACAATTTGGTACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGACAGGAAAATCTAGACATTTTGGCTTCATACAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCTGAGACCATGCACAATTATCTGCTACAGGAGCATGTTCTGCAGGTTCATCTGATACCTCCAGAGGATGTTCATCCAAAATTATGGAGGGGCTTCAGCAATCGGTTCAAGCCTTTGGATTCTGTTCAAATTGAAAGAAAGCGGCTTGGCAAGGAAAGAACATTGGAAGAGCAACAAAAGTTGGTTGAAAAGATCATGAAGCGTGGTGAAAAACGACGAAAGAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGCACCGTCCAACCTGGTCCTAAGAAAATAAAGTTTGAAGACTGA 1296 0.4992 MDLPHRPPLSSCSLLLFLLLIPQFASSDLAKDRQECAEQLVGLAPCLAYVNGEAKTPTIDCCTGLKQVIDKSKKCLCLLIKYRNEPDLGVTLNASLAVNLPSACHAPANISQCIDLLHLAPNSSEAKVYEGFDKGSRTNTSSSTSSSTTVAPTGKGSSPSTSADEKNGGVSASVWEKSWHEIEGLAPSRSRRQLLFQPPLSKVEVASSTVAVVEDEGKMGVQAKKAMKKSLKKATAKVSVSSKKTEGDFLPLEGGPARKLPEHKSPENTATVLYIGRIPHGFYEKEMEGFFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVAETMHNYLLQEHVLQVHLIPPEDVHPKLWRGFSNRFKPLDSVQIERKRLGKERTLEEQQKLVEKIMKRGEKRRKRIEAAGIDYECPEIVGTVQPGPKKIKFED 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele21g0052 431 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 35 114 IPR036312 -
Lele21g0052 431 PRINTS Plant phospholipid transfer protein signature 35 51 IPR000528 GO:0006869|GO:0008289
Lele21g0052 431 PRINTS Plant phospholipid transfer protein signature 91 108 IPR000528 GO:0006869|GO:0008289
Lele21g0052 431 PRINTS Plant phospholipid transfer protein signature 56 70 IPR000528 GO:0006869|GO:0008289
Lele21g0052 431 MobiDBLite consensus disorder prediction 133 169 - -
Lele21g0052 431 MobiDBLite consensus disorder prediction 134 168 - -
Lele21g0052 431 Gene3D - 33 112 IPR036312 -
Lele21g0052 431 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 271 349 IPR000504 GO:0003723
Lele21g0052 431 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 273 342 IPR000504 GO:0003723
Lele21g0052 431 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 222 430 - -
Lele21g0052 431 CDD RRM_NIFK_like 272 345 - -
Lele21g0052 431 SMART rrm1_1 272 345 IPR000504 GO:0003723
Lele21g0052 431 SMART aai_6 36 113 IPR016140 -
Lele21g0052 431 CDD AAI_LTSS 43 105 - -
Lele21g0052 431 Gene3D - 203 353 IPR012677 -
Lele21g0052 431 Pfam Probable lipid transfer 27 113 IPR016140 -
Lele21g0052 431 SUPERFAMILY RNA-binding domain, RBD 254 360 IPR035979 GO:0003676
Lele21g0052 431 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 33 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele21g0052 Lele-ChrLele21 359032 364438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele21g0052 15 186 Acyl Lipid Metabolism Gene Families AT2G44290 44.134 1.09e-47 160
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0052 21 359032 364438 Lele23g2003 23 22815351 22816112 hybridization
Lele21g0052 21 359032 364438 Lele24g0046 24 331788 337958 hybridization