Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele24g0046 ATGGATTTACCCCGTCATCTTCCACTCTCTTCCTACTTCATCCTCCTCTTTCTTCTTCTTATTCCCCATTTCGCTTCCTCTGATTTAGCCAAGGACCGGCAAGAGTGCGGAGAACAACTCGTCGGCCTCGCCCCCTGTCTCGCTTACGTCAACGGTGAGGCCAAAACTCCCACCATCGATTGCTGTACCGGTCTCAAACAGGTCATCGACAAGAGCAAGAAATGCCTCTGCCTCCTCATCAAATACCGCAACGAACCCGACCTCGGCGTCACCCTCAACGCCTCTCTCGCCGTCAACCTTCCCTCCGCCTGTCACGCCCCCGCCAACATCTCTCATTGCATCGATCTTTTGCATTTGTCTCCTGATTCTTCTGAGGCTAAGGTATACGAGGGCTTCGACAAAGCCGCTCACACTAACAGTTCCAGTTCCACTTCTGGTTCCACCCCGGTCGCGCCTACTGGGAAGGGATCGAGCCCCAGCACGAGTGCTGATGAGAAGAGCGGAGGCGTCTCTGTGTCTGTGTGGGAAAAGAGGCGGGAGATGGGGGTCAAGGCTAAGAAAGCAATGGAGAAGAGTCTGAAAAAGGCCACAGCTAAGTTGTCTTTTCTGAGCAAGAAAACAGAGGGTGACTTCTTGCCTTTGGAAGGTGGTCCTGCACGCAAACTTCCTGAACATAAATCGCCAGATAACACATCCACTGTTTTATATATTGGTCGGATACCACATGGGTTCTTTGAGAAGGAGATGGAAGGTTTCTTTGGACAATTTGGTACCATCAAGAGGTTGAGAATTGCAAGAAATAAAAAGACAGGAAAATCTAGACATTTTGGCTTCATACAATTTGAATCTCCTGAGGTGGCAAAAATTGTAGCCGAGACCATGCACAATTATCTACTACAGGAACATGTTCTGCAGGTTCACCGGATACCTCCAGAGGATGTCCATCCAAAATTATGGAGGGGCTTCAATTGCCGGTTTAAGCCATTGAACTCTGTTCAAATTGAAAGAAAGCGGCTTGGCAAGGAAAGAACATTGGGAGAGCAACAAAAGTTAGTTGAAAAGATCATGAAGCGTGGCGAAAAACGACAAAAGAGGATAGAGGCTGCTGGGATTGATTATGAATGCCCTGAGATTGTGGGCACTGTCCAGGCTGGTCCTAAGAAAATAAAGTTTGAAGACTGA 1182 0.4839 MDLPRHLPLSSYFILLFLLLIPHFASSDLAKDRQECGEQLVGLAPCLAYVNGEAKTPTIDCCTGLKQVIDKSKKCLCLLIKYRNEPDLGVTLNASLAVNLPSACHAPANISHCIDLLHLSPDSSEAKVYEGFDKAAHTNSSSSTSGSTPVAPTGKGSSPSTSADEKSGGVSVSVWEKRREMGVKAKKAMEKSLKKATAKLSFLSKKTEGDFLPLEGGPARKLPEHKSPDNTSTVLYIGRIPHGFFEKEMEGFFGQFGTIKRLRIARNKKTGKSRHFGFIQFESPEVAKIVAETMHNYLLQEHVLQVHRIPPEDVHPKLWRGFNCRFKPLNSVQIERKRLGKERTLGEQQKLVEKIMKRGEKRQKRIEAAGIDYECPEIVGTVQAGPKKIKFED 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele24g0046 393 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 182 392 - -
Lele24g0046 393 SUPERFAMILY RNA-binding domain, RBD 215 320 IPR035979 GO:0003676
Lele24g0046 393 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 35 114 IPR036312 -
Lele24g0046 393 Coils Coil 186 206 - -
Lele24g0046 393 PRINTS Plant phospholipid transfer protein signature 91 108 IPR000528 GO:0006869|GO:0008289
Lele24g0046 393 PRINTS Plant phospholipid transfer protein signature 56 70 IPR000528 GO:0006869|GO:0008289
Lele24g0046 393 PRINTS Plant phospholipid transfer protein signature 35 51 IPR000528 GO:0006869|GO:0008289
Lele24g0046 393 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 311 IPR000504 GO:0003723
Lele24g0046 393 SMART rrm1_1 234 307 IPR000504 GO:0003723
Lele24g0046 393 MobiDBLite consensus disorder prediction 136 172 - -
Lele24g0046 393 MobiDBLite consensus disorder prediction 136 168 - -
Lele24g0046 393 Gene3D - 33 111 IPR036312 -
Lele24g0046 393 SMART aai_6 36 113 IPR016140 -
Lele24g0046 393 CDD AAI_LTSS 43 105 - -
Lele24g0046 393 Gene3D - 214 308 IPR012677 -
Lele24g0046 393 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 235 304 IPR000504 GO:0003723
Lele24g0046 393 FunFam Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein 33 113 - -
Lele24g0046 393 Pfam Probable lipid transfer 30 113 IPR016140 -
Lele24g0046 393 CDD RRM_NIFK_like 234 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele24g0046 Lele-ChrLele24 331788 337958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele24g0046 9 168 Acyl Lipid Metabolism Gene Families AT2G44290 45.625 6.89e-46 155
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g0052 21 359032 364438 Lele24g0046 24 331788 337958 hybridization
Lele22g0050 22 312111 312869 Lele24g0046 24 331788 337958 hybridization