Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0966 ATGGCCCCTATCATCCGCAACCGCAACAACAATGCCCTACAAAGAACGGGCCTCTCCCATGAAACTTCATCATCCTCCATAAAGCTCGAAGCATCAACCTTCCTCGCCAATGGCCACCCAATTCTCACTCAAGTCCCGCCGAACATCACAGCAATCCCGGCCGACGACGTCGCCACCGCCGGTTGCTTCGTCGGCTTTGATGCCGACCACCCCAACCACCGCCACGTGGTTCCCATCGGAAAGCTCAGTGAGATCAGGTTCATGAGCATTTTCAGATTCAAGTTATGGTGGAGCACCCATTGGGCCGGAACTAAAGGAAGCGATGTGGAGAACGAAACCCAAATGATGATGGTGGAGAATTCTGTTCACTTGGGTCGTCCCTACGTCCTCCTCCTTCCCCTCATCGAAGGCCCATTCAGAGCTTGTCTGCAACCTGGTCTCCACGATGATTACGTGGACATGTGCTTGGAGAGTGGCTCCACGCGCGTCTCTAGTTCTACCTTCAGAAGCTGCCTGTACATCCACGCGGGAGATGATCCTTATAACTTAATGAAGGAAGCCATGAAAGTGATGAGAGACCATCTGGGAACGTTCAAGCTTCTGGAAGAGAAAACGCCTCCAGGAATAGTGGACAAGTTTGGATGGTGCACTTGGGACGCGTTTTATCTCACGGTGGATCCAAAAGGAGTTCGGGAAGGTGTGAGAGGCCTTGCGGAGGGTGGGTGCCCTCCAGGTTTCGTCATAATCGACGACGGTTGGCAAAGCTTCTGCCACGACGGAGAAGAAGCTGTCGGCGATAGTGGAAGCTTGAATTGTGCAATACCAGGAGAGCAAATGCTGAATAGGCTTACGAGTTTCGAAGAGAATAGCAAGTTTAAGGAGTATAGTAGCAGGAAGAGTCCTTCTGAGAGAGGGCTGGGGGCCCTTGTGAGGGACCTGAAGGAGGAGTTTAGGAGCTTAGAGGATGTGTATGTGTGGCATGCGTTCTGTGGGTATTGGGGCGGGCTTATGCCCAAAGTGGCGGGCCTGCCGGAGGCCCAGGTGGTTCTTCCGAAGTTGTCGGAAGGAGCGGAGGAGCTGATGAGGGATCTGGCGGTGGACAAGATATTGGAAGTCGGCGTGGGGTTGGTGTCGCCGGAAGATGCTCACAAGTTGTATGACGGACTCCATTCTCACCTGCAAACGGTGGGTGTTGACGGCGTCAAGATTGATGTCACCCAAATTCTGGAGATGCTATCAGAGGAACATGGGGGTCGTGTACAACTCAACAAAGCTTATTACAAAGCCCTGACTGATTCAGTGAAGAAGCACTTCAAAGGCAACGGCGTCATCTCTAGCATGCAGCAATGCAACGACTTCATGTTCCTCGGTACCCAAACCATTTCTCTCGGTCGAGTCGGTGATGATTTTTGGTGCATCGACCCTGCGGGAGATCCAAACGGGACGTATTGGCTCCAAGGATGTCACATGGTGCACTGTGCCTATAACAGCTTGTGGATGGGAAATTTCATACACCCTGATTGGGACATGTTCCAATCCGATCACCCTTGTGCTGAGTTCCATGCCGGTTCACGAGCCATCTCCGGTGGTCCTGTTTATGTCAGCGACTCTGTTGGCAGACACAACTTCAATCTCCTCAACAAGCTCGTCCTCCCTGATGGCTCCATTCTCAGGTGCCAACACTACGCCCTCCCCACCAGAGACTGCTTGTTTCAAGACCCTCTTCATGATGCCAAAACCATGCTCAAAATCTGGAACCTCAACAAATATACGGGGGTTCTGGGGGTGTTTAATTGCCAAGGAGGAGGATGGTGCCGTATTACAAGGAGGAACATAAGCGCCAGTGAGTGTTCGAAGAGGGTGAGTTGCTTTGCGAGTCCTGAGGACGTTGAATGGAGCAAGGGGATGAGTCCGATATGCGTAACAAAGGAGGATGTGTTTGCTGTGTACATGATCAAGGACCACAAATTGAAGCTGTTGAAGTGGTCGGAAAGTGTGGAGATTTCGCTCGATCCCTTCCATTATGATCTCTTGACGGTTTCTCCGGTGACGGTGTTTCCTGAGAGGTTAATCCAATTTGCTCCTATTGGATTGGTGAATATGCTAAACTCGGGTGGGGCAATTCAGAGCATGGAATTTGGAAAACAGGGGAATGAGGTGAGAATTGGAGTGAGAGGGCATGGAGAGATGAGGGTATTTGCTTCAGAGAAGCCTGCGAGCTGTAAAGTTGATGGAGTGGCGGTTGAATTTGGATACGAGGATAAGATGGCAAAGGTTCATGTTCCGTGGACTGCTGCTTCTTCAAGATTGTGTATGGTGGAGTACTTGTTCTGA 2334 0.5124 MAPIIRNRNNNALQRTGLSHETSSSSIKLEASTFLANGHPILTQVPPNITAIPADDVATAGCFVGFDADHPNHRHVVPIGKLSEIRFMSIFRFKLWWSTHWAGTKGSDVENETQMMMVENSVHLGRPYVLLLPLIEGPFRACLQPGLHDDYVDMCLESGSTRVSSSTFRSCLYIHAGDDPYNLMKEAMKVMRDHLGTFKLLEEKTPPGIVDKFGWCTWDAFYLTVDPKGVREGVRGLAEGGCPPGFVIIDDGWQSFCHDGEEAVGDSGSLNCAIPGEQMLNRLTSFEENSKFKEYSSRKSPSERGLGALVRDLKEEFRSLEDVYVWHAFCGYWGGLMPKVAGLPEAQVVLPKLSEGAEELMRDLAVDKILEVGVGLVSPEDAHKLYDGLHSHLQTVGVDGVKIDVTQILEMLSEEHGGRVQLNKAYYKALTDSVKKHFKGNGVISSMQQCNDFMFLGTQTISLGRVGDDFWCIDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSDHPCAEFHAGSRAISGGPVYVSDSVGRHNFNLLNKLVLPDGSILRCQHYALPTRDCLFQDPLHDAKTMLKIWNLNKYTGVLGVFNCQGGGWCRITRRNISASECSKRVSCFASPEDVEWSKGMSPICVTKEDVFAVYMIKDHKLKLLKWSESVEISLDPFHYDLLTVSPVTVFPERLIQFAPIGLVNMLNSGGAIQSMEFGKQGNEVRIGVRGHGEMRVFASEKPASCKVDGVAVEFGYEDKMAKVHVPWTAASSRLCMVEYLF 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0966 777 Gene3D Aldolase class I 210 549 IPR013785 -
Lele20g0966 777 SUPERFAMILY (Trans)glycosidases 207 559 IPR017853 -
Lele20g0966 777 Pfam Raffinose synthase or seed imbibition protein Sip1 30 760 IPR008811 -
Lele20g0966 777 PANTHER - 27 773 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0966 Lele-ChrLele20 15747787 15750890 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0966 16 777 Glycoside Hydrolase AT5G40390 59.283 0.0 976
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1071 17 21212739 21215429 Lele20g0966 20 15747787 15750890 hybridization
Lele18g0470 18 2745961 2749083 Lele20g0966 20 15747787 15750890 hybridization