Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0470 ATGGCCCCTATCATCCGCAACCGCAACAACAATGCCCTACAAAAAACGGGCCTCTCCCATGAAACTTCATCATCCTCCATAAAGCTCGAAGTATCAACCTTCCTCGCCAATGGCCACCCTATTCTCACTCAAGTCCCGCCGAACATCACAGCAACCCAGGCCGACGACGTCGCCGCCTCCGGTTGCTTCGTCGGCTTTGATGCCGACCACCCCAGCCACCGCCATGTGGTTCACATCGGGAAGCTCAGTGAGATCAGGTTCATGAGCATTTTCAGATTCAAGTTATGGTGGAGCACCCATTGGGCCGGAACTAAAGGAAGCGATGTGGAGAACGAAACCCAAATGATGATGGTGGAGAATTCTGATCACTTGGGTCGTCCCTACGTCCTCCTTCTTCCCCTCATCGAAGGCCCATTCAGAGCTTGTCTGCAACCTGGTCTCCACGATGATTACGTGGACATGTGCTTGGAGAGTGGCTCCACGCGCGTCTCTAGTTCTACCTTCAGAAGCTGTCTGTACATCCACGCGGGAGATGATCCTTATAACCTAATGAAGGAAGCCATGAAAGTGATGAGAGACCATCTGGGAACGTTCAAGCTTCTGGAAGAGAAAACGCCTCCAGGAATAGTGGACAAGTTTGGATGGTGCACTTGGGACGCGTTTTATCTCACGGTGGATCCAAAAGGAGTTCGGGAAGGTGTGAGAGGCCTTGCGGAGGGTGGGTGCCCTCCAGGTTTCGTCATAATCGACGACGGTTGGCAAAGCTTCTGCCACGACGGAGACGAAGCTGTCGGCGATAGTGGAAGCTTGAATTGTGCAATACCAGGAGAGCAAATGCTGAATAGGCTTACGAGTTTTGAAGAGAATAGCAAGTTTAAGGAGTATAGTAGCAGGAAGAGTCCTTCTGAGAGAGGGCTGGGGGCCCTTGTGAGGGACCTGAAGGAGGAGTTTAGGAGCTTAGAGGATGTGTATGTGTGGCATGCGTTCTGTGGGTATTGGGGTGGGCTTATGCCCGAAGTGGCGAACCTGCCGGAGGCCCAGGTGGTTCTTCCGAAGTTGGCGGAAGGAGCGGAGAAGCTGATGAGAGATCTGGCGGTGGACAAGATATGGGAAGTCGGCGTGGGGTTGGTGTCGCCGGAAGATGCTCACAAGTTGTACGACGGACTCCATTCTCACCTGCAATCGGTGGGTGTTGACGGCGTCAAGATTGATGTCACCCAAATTCTGGAGATGCTATCAGAGGAACATGGGGGTCGTGTAGAACTCAACAAAGCTTATTACAAAGCCCTGACTGATTCAGTGAAGAAGCACTTCAAAGGCAACGGCGTCATCTCTAGCATGCAGCAATGCAACGACTTCATGTTCCTCGGTACCCAAACCATTTCTCTCGGTCGAGTCGGTGATGATTTTTGGTGTATCGACCCTGCGGGAGATCCAAACGGAACGTATTGGCTCCAAGGATGTCACATGGTGCACTGTGCCTATAACAGCTTGTGGATGGGAAATTTCATACACCCTGATTGGGACATGTTTCAATCCGATCACCCTTGTGCTGAGTTCCATGCCGCTTCACGAGCCATCTCCGGTGGTCCTGTTTATGTCAGCGACTCTGTTGGCAGACACAACTTCAAGCTCCTCAACAAGCTCGTCCTCCCTGATGGCTCCATTCTCAGGTGCCAACACTACGCCCTCCCCACCAGAGACTGCTTGTTTCAAGACCCTCTTCATGATGCCAAAACCATGCTCAAAATCTGGAACCTCAACAAATGTACGGGGGTTCTGGGGCTGTTTAATTGCCAAGGAGGAGGATGGTGCCGTGTTACAAGGAGGAACGTAAGCGCCAGTGAGTGTTCGAAGAGGGTGAGTTGCTTTGCGAGTCCTGAGCACGTTGAATGGAGCAAGGGGATGAGTCCGATATGCGTAACAGAGGAGGATTTGTTTGCTGTGTACATGATCAAGGACCACAAATTGAAGCTGTTGAAGTGGTCTGAAAGTGTGGAGATTTCGCTCGATCCCTTCCATTATGATCTCTTGACTGTTTCTCCGGTGACGGTGTTGCCTGAGAGGTCAATCCAATTTGCTCCGATTGGACTGGTGAATATGCTAAACTCGGGTGGGGCAATTCAGAGCATGGCATTCGGAAAACAGGGGAATGAGGTGAGAATTGGAGTGAGAGGGCATGGAGAGATGAGGGTGTTTGCTTCAGAGAAGCCTGTGAGCTGTAAAATTGATGGAGTGGCCGTTGAATTTGGATACGAGGATAAGATGGCAAAGGTTCATGTTCCCTGGACTGCTGCTTCTTCAAGATTGTGTATGGTGGAGTACTTGTTCTGA 2334 0.5124 MAPIIRNRNNNALQKTGLSHETSSSSIKLEVSTFLANGHPILTQVPPNITATQADDVAASGCFVGFDADHPSHRHVVHIGKLSEIRFMSIFRFKLWWSTHWAGTKGSDVENETQMMMVENSDHLGRPYVLLLPLIEGPFRACLQPGLHDDYVDMCLESGSTRVSSSTFRSCLYIHAGDDPYNLMKEAMKVMRDHLGTFKLLEEKTPPGIVDKFGWCTWDAFYLTVDPKGVREGVRGLAEGGCPPGFVIIDDGWQSFCHDGDEAVGDSGSLNCAIPGEQMLNRLTSFEENSKFKEYSSRKSPSERGLGALVRDLKEEFRSLEDVYVWHAFCGYWGGLMPEVANLPEAQVVLPKLAEGAEKLMRDLAVDKIWEVGVGLVSPEDAHKLYDGLHSHLQSVGVDGVKIDVTQILEMLSEEHGGRVELNKAYYKALTDSVKKHFKGNGVISSMQQCNDFMFLGTQTISLGRVGDDFWCIDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPDWDMFQSDHPCAEFHAASRAISGGPVYVSDSVGRHNFKLLNKLVLPDGSILRCQHYALPTRDCLFQDPLHDAKTMLKIWNLNKCTGVLGLFNCQGGGWCRVTRRNVSASECSKRVSCFASPEHVEWSKGMSPICVTEEDLFAVYMIKDHKLKLLKWSESVEISLDPFHYDLLTVSPVTVLPERSIQFAPIGLVNMLNSGGAIQSMAFGKQGNEVRIGVRGHGEMRVFASEKPVSCKIDGVAVEFGYEDKMAKVHVPWTAASSRLCMVEYLF 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0470 777 Pfam Raffinose synthase or seed imbibition protein Sip1 32 760 IPR008811 -
Lele18g0470 777 PANTHER - 27 773 IPR008811 -
Lele18g0470 777 SUPERFAMILY (Trans)glycosidases 207 559 IPR017853 -
Lele18g0470 777 Gene3D Aldolase class I 210 549 IPR013785 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0470 Lele-ChrLele18 2745961 2749083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0470 16 777 Glycoside Hydrolase AT5G40390 59.872 0.0 977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0470 18 2745961 2749083 Lele19g0490 19 2778905 2782317 hybridization
Lele18g0470 18 2745961 2749083 Lele20g0966 20 15747787 15750890 hybridization