Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1071 ATGTTGATAGGAACCTGTGGATCCTTTTTCAGTGGATCCATGGAGCCGTTTTCTGCGATTACATGAGGAGAATGGTGCCGTGTTACGAGGAGGAACAGAAGCGCCAGTGAGTGTTCCAAGAGAGTGAGTTGCTTTGCGAGTCCTGAAGATGTTGAGTGGAGCAAGGGGATGAGTCCGATATGCGTAAAAGAGGAGGATGTGTTTGCTGTGTACATGATTAAGGACCACGACTTGAAGCTGTTGAAGTGGTCGGAAATTGTGGAGATTTCCCTGGATCCCTTCCATTATGAGCTCTTGACGCTTTCTCCGGTGACGGTGTTGCCTGAGAGAATTGGAGTGAGAGGGCATGGAGAGATGAGGGTTTTCGCTTCAGAGAAGACAGTGAGCTGTAAAGTTGATGGAGTGGCCGTTGAATTTGGTTACGAGGATAAGATGGGAACGGTTCATGTTCCCTGGACTGCTTCTTCTTCAAGATTGTGTATGGTAGAGTTCTTGTTCTGA 501 0.477 MLIGTCGSFFSGSMEPFSAITXGEWCRVTRRNRSASECSKRVSCFASPEDVEWSKGMSPICVKEEDVFAVYMIKDHDLKLLKWSEIVEISLDPFHYELLTLSPVTVLPERIGVRGHGEMRVFASEKTVSCKVDGVAVEFGYEDKMGTVHVPWTASSSRLCMVEFLF 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1071 166 Pfam Raffinose synthase or seed imbibition protein Sip1 110 150 IPR008811 -
Lele17g1071 166 Pfam Raffinose synthase or seed imbibition protein Sip1 22 107 IPR008811 -
Lele17g1071 166 PANTHER - 16 107 IPR008811 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1071 Lele-ChrLele17 21212739 21215429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1071 23 166 Glycoside Hydrolase AT5G40390 37.356 1.23e-32 120
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1071 17 21212739 21215429 Lele19g0490 19 2778905 2782317 hybridization
Lele17g1071 17 21212739 21215429 Lele20g0966 20 15747787 15750890 hybridization