Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0954 ATGTTGAACCTTCAGAACCCATTTCATCTTCTTCACCCATTAAAGCAAAGATTTTTGCCCCCTTGTCACTCTCTCACCACCATAATTCAGCCATCACCGGCAACGCCGCCGCTGGTGGAGGAGGACTTCGCAGTTGCCAAACTCATTCTCGAATCAGATACGCAATCCCTGCCTGAAATCCTACAAAGAACAAGTTTCCAATGGAATCCAGACCTAGTGGACAAGGTCTTCAAACGGCTATGGAACCATGGACCCAAAGCACTGCAATTTTTCAAGTACCTTGAACGCCACCCGACCTATACTCATGCCTCGTCATCCTTTGATTACGCCATTGACATCTCGGCGCGTATGCGTGATTACAAGTCTGTTTGGACCCTGGTTTCTCGTATGCGAGCTTGCCGTGTCGGACCAAGCCCTCGAACTTTCGCGATCATTACTGAGAGGTATGTCGCTGCTGGTAAAGCCGATAGAGCTGTAAAGATTTTTCTGTCAATGCACAAACATGGTTGCCGTCAGGATTTGAATTCTTTTAACACGATTCTTGATGTGTTGTGCAAGTTCAAACGAGTAGAGATGGCTTATAATTTGTTCAAAGTTTTCAGAGGTAGGTTTAAGGCTGATATTATCAGTTATAACATAATTGCTAACGGTTGGTGCTTGATTAAGCGAACGCCCAAGGCATTGGAGGTGATGAAGGAGATGGTAGAAAGGGGATTGACTCCAACTTTAACTACTTATAATATATTGCTTAAAGGGTATTTCAGAACGGGTCAACTGAAGGAAGCCTGGGATTTCTTTTTGGAAATGAAGAAGAGGAAATGTGATATTGATGTTGTGACCTATACGACCATGGTTCATGGGTTTGGTGTTGTGGGTGAAATTCAGAAAGCTAGAAAAGTTTTTGATCAGATGGTTAGGGATGGTGTTCTTCCTTCAGTAGCAACATACAATGCTTTGATTCAAGTTTTATGTAAGAAGGATAGTGTGGAGAATGCTATATTGGTATTTGAAGAGATGATAAGAAAGGGCTATGTGCCTAATTCAGTTACTTACAATGCAATTATCAGAGGATTGTGTCATACAGGTGATATGCAAAGGGCCATGGAGTTTATGGTGAGAATGGAGGAAGAAGATGATTGTCAGCCAAATGTTCAGACATATAATGTCATGATACGATACTTCTGCGATACCGGGGAGATTGGGAAGGGTTTAGAAATGTTAGAGAATATGAGGAACAGATCATGCTTGCCCAATCTAGACACATATAACATTCTGATCAGTGACTTGTTTGTGAGGAAGAAATCAGATGATTTAGTGGTAGCTGGGAAGTTGTTGAAGGAAATGATTGATAGAGGCTTCCTGCCACGGAAATTTACTTTTAATCGAGTATTAAATGGGCTTCTGTTAACAGGAAATCAAGATTTTGCAAAAGAGATACTGAGGTCAGAAAGTAGATGTGGCCGGGTTCCTCGGCATTTGAAGCTCTGA 1488 0.42 MLNLQNPFHLLHPLKQRFLPPCHSLTTIIQPSPATPPLVEEDFAVAKLILESDTQSLPEILQRTSFQWNPDLVDKVFKRLWNHGPKALQFFKYLERHPTYTHASSSFDYAIDISARMRDYKSVWTLVSRMRACRVGPSPRTFAIITERYVAAGKADRAVKIFLSMHKHGCRQDLNSFNTILDVLCKFKRVEMAYNLFKVFRGRFKADIISYNIIANGWCLIKRTPKALEVMKEMVERGLTPTLTTYNILLKGYFRTGQLKEAWDFFLEMKKRKCDIDVVTYTTMVHGFGVVGEIQKARKVFDQMVRDGVLPSVATYNALIQVLCKKDSVENAILVFEEMIRKGYVPNSVTYNAIIRGLCHTGDMQRAMEFMVRMEEEDDCQPNVQTYNVMIRYFCDTGEIGKGLEMLENMRNRSCLPNLDTYNILISDLFVRKKSDDLVVAGKLLKEMIDRGFLPRKFTFNRVLNGLLLTGNQDFAKEILRSESRCGRVPRHLKL 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 312 346 IPR002885 -
Lele20g0954 495 SUPERFAMILY HCP-like 211 344 - -
Lele20g0954 495 Pfam PPR repeat family 311 360 IPR002885 -
Lele20g0954 495 Pfam PPR repeat family 244 288 IPR002885 -
Lele20g0954 495 Pfam PPR repeat family 382 429 IPR002885 -
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 242 276 IPR002885 -
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 347 382 IPR002885 -
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 383 417 IPR002885 -
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 207 241 IPR002885 -
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 277 311 IPR002885 -
Lele20g0954 495 Gene3D Tetratricopeptide repeat domain 305 376 IPR011990 GO:0005515
Lele20g0954 495 Gene3D Tetratricopeptide repeat domain 49 200 IPR011990 GO:0005515
Lele20g0954 495 Gene3D Tetratricopeptide repeat domain 201 304 IPR011990 GO:0005515
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Lele20g0954 495 Pfam Pentatricopeptide repeat domain 146 184 IPR002885 -
Lele20g0954 495 Gene3D Tetratricopeptide repeat domain 377 494 IPR011990 GO:0005515
Lele20g0954 495 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 418 455 IPR002885 -
Lele20g0954 495 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 177 483 - -
Lele20g0954 495 Pfam PPR repeat 209 239 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 209 242 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 245 277 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 386 418 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 279 312 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 315 347 IPR002885 -
Lele20g0954 495 TIGRFAM PPR: pentatricopeptide repeat domain 349 384 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0954 Lele-ChrLele20 15651500 15652987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele20g0954 105 490 Glycosyltransferase AT1G05670 25.840 8.49e-45 166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1056 17 21118606 21120014 Lele20g0954 20 15651500 15652987 hybridization
Lele18g0481 18 2834043 2842831 Lele20g0954 20 15651500 15652987 hybridization