Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0481 ATGCCAGGTGCCTCACATACAGAACTTTATAGCTTTCAGTCGTACCATAATCCTTTGTACACCTTCGTCTTATTCATTTATTACAAAACCCTAGCTCAAGAATTTCAAAATGAAGCAATCAAAGTTTCCACATCAAAATGTAGTTCTTCAGAGGTCTCTTTGAAATTCTTGAGAGCTCCCCATGCATTCTCTCACTTAAACTCAGCTACATTTGCTTTTGAAGCTCTGGATTATGGTAGTAGCAGCCCTTGCACAAACTGTTCTTTCACTTGCAAGCTTGATGATGGAATCAGATCAGTTTGTAAAGCAACAAGAGTTATCTACTCAAGCTTGAGAGATGGAAATCATAATTTTGAGGTGTGCGCTAATGGGCCTCAAGGACTTGGATGTGCCAGCTATAATTGGACTGTCGATACAGTTCCCCCAACAGCATATGTTACTGCCTCAACATCTTTCACAAGCGCTTTAAATGTTTCAGTTGATGTAACTTTCAGTGAATCTTGTATAGGTGAAGGCTTCGGGTGTATATCTGTAAATGCTTGCAATCTTCTGGTCTATGGCGCGGGCCAGGTTTTACCGTCTTCCTTTACCGTTTTGCAACCCAACCTGAAGTATTCTCTTCTCGTAAGTTTGTCACCCACAGTTCAATTTGGACGGGCAATCCTTGTAATGGATAAAAATTTTTGCACTGACATGGCTGGTAACAGCTTTACAAGAACTCAAAATTCAAGTGTTTATGTGCACTTTGATAGAAGATGGGACTATGTAAACTTGAGGACTCGTGTAACAGAAAGACTACTTCAGCTTAACAGTGAAATTAGAACAGTACTGGCAACTAATGACTATAATAAGCTGAAGGTGTTTGTTTACTTCTCAGCACCAGTTCTGAATTCCTCTTCAGAACTCGTAAAACATCTCAGCATAAATCAGGGTTCACTTCTTCCAACTAGTGGAAAAACTCACGGAAACCGCAGATTTGGATTCTTGATTTCTAATATATCCTCAAACACAATAATCTCAGTGAGCTTCAATTCAACATCGATAATTAGCAGACAAGGGATTCCAGTTGCTCCAGTTGCACCAGTTACTTTCCTTTATGATTCTATGAGGCCTTCTGTAAAATTGAGTGCATATAGCATGAGGACACAAGAACACAATGTGGAGATATTAATCAACTTCCGTGAAATTAGTAGAAGCATATACATTATTGAGCTACAAGCCGATGACAATGTAATATCTATCAATGTTCCTGAGAATGTAACTCATGACATTGCTGGAAACAAAAATCTAGCTTCCAACGTTGTACAAGTGAGGCACTACTCCAGTCCTCTGATTTCTATGTTGATTTCTACATTTGCAACTGCTTCTTTTGGGTTGACATCTCTTGCTGCTGGCCTTCTTACTATCTCTACCGCTAGCCTTCAATATTTTGGTGCCTTTTCAAGATCATCTTCTTTCTTGACCGTTGACCCAGCAAGGAGTTCTAGTCCTTTTGGTAGTTCTAATCCATTTGTCTCCAAAGTTCCAGCAAAGATTCCAAACATGAAGTTAATAGATAATTTGAGTAATTCTGCTTCAGTATATGCATCACCTCTCACTTCTTCAGAGTATCAGCTATATTTTGAGAACCTGAATACGCAACCAAAAGCTGAGTTTGTTTCGGATTCACGACATCCCAGTGGGAAGAGAAATTCTGAAAAACAAAAGAAATATGGGGCCCTCACTTTCCCAAGATTTGAGATTTTTCTTCTATTCCTTTCACTGCCTGGCATTTGCAAGGCCTCTACTGCCCTTATAAGAGGAAGTTCATCAGGAATGGTGGTTGGCATTTTGCTGTTAGTTATCGTGTCATTTGTGCTTCTATCTCTGTTCTTGTTCCTCTCTGTTGGAATCACACTTGGGAAACTACTTCAGTACAAGGAAGTTCATCAAGAAGGCCAGAAATTTCACTGGTATCAAGAACTTATCCGAGTAACACTAGGTCCAGGTAAAAGAGGCCAATGGACTTGGAAAGAACTACCAAACTCTGTGCGTTTAACCATCTTTGGCCCTCTATTTGAAGATCTAAGAGGTCCTCCAAAGTACATGCTTTCACAGTTTTCTGGTGGGCATCCTCAGAATCAAGGAGATCGCATCATAGCCTCTGAAGATGAAACAGAAGATGCAGAAGCACCTTTCATTCAGAAGCTTTTTGGGATTCTCAGAATATACTACGTGCTACTTGAATCTATCAGACGAGTTTCGTTTGGGATTTTGGTAGGTGTTTATAACAAGACTGAGTCTTCCAAAACTCCAACAATTATCATACTCTCTATTACTGCATTTCAGCTCTTCTTCGTTGTGCTAAAGAAGCCATTCATAAAGAAAAAAGTTCAGTTAGTTGAGATCATCTCTCTCTCCTGTGAAGTTGCTCTGTTTGCTACCTGCATAACACTCTTAAACAAGGATTTTTCTCTTGGAACTGAGACTAAAGTTGGAATCTTTATGCTTATTCTGTTCTTGGTGGGGTTTCTGGCACATATTATGAATGAGTGGTATGCTTTATACAGACAGACAAGGATGCTAGATCCTGAGGAAAAGTCATTCTTGAGAGGTTTGAAAATAGCTTCCATTGGGTTTCTGCTTTATTTCATTCCTCAGAGATTCATCAAGAGCTTGGAAAGTGGGTTCCCTAAAAATCATGGCGGGGATGAAGAAACAAGGGATGTTACTTTCTCAGATGAGAGACTCAAAAACTTAGGTGGTAGAAGAAGTTCAGGTTCAACTGATAAACCATGGCTGAAACAACTGAGAGAGCTTGCAAAGGCTAGCTTTGGAAAAGAAGGAAGTCCAAATGATCCCTCTACAAGTACTACCAGATGGAGTGGGGTATGGGGAACTAATAAAAGGAGTGGAAGCTCTTCTATGAACTCATCTTCTGATTACAAGTCAAAACCAAGCGAGGATGTAGAAGTGATGTTGAAGCTTCAGAACCCATTTCATCTTCTTCACCCATTAAAGCAAAGATTTTTGCCCCCTTGTCACTCTCTCACCACCATTATTCAGCCATCACCGGCAACGCCGCCGCTGGTGGAGGAGGACTTCGCAGTTGCCAAACTCATTCTCGAATCAGATACGCAATCCCTGCCTGAAACCCTACCAAGAACAAGTTTCCAATGGAATCCAGACCTAGTGGACAAGGTCCTCAAACGCCTATGGAACCATGGACCCAAAGCACTGCAATTTTTCAAGTACCTTGAACGCCACCCGACCTATACTCATGCCTCGTCATCCTTTGATTACGCCATTGACATCTCGGCGCGTATGCGGGATTACAAGTCTGTTTGGACCCTGGTTTCTCGTATGCAAGCTTGCCGTATCGGACCAAGCCCTCGAACTTTCGCGATCATTACTGAGAGGTATGTCGCTGCTGGTAAAGCCGATAGAGCTGTAAAGATTTTTCTGTCAATGCACAAACATGGTTGCCGTCAGGATTTGAATTCTTTTAACACGATTCTTGATGTGTTGTGCAAGTTCAAACGAGTAGAGATGGCTTATGATTTGTTCAAAGTTTTCAGAGGTAGATTTAAGGCTGATATTATCAGTTATAACATAATTGCTAACGGTTGGTGCTTGATTAAGCGAACGCCCAAGGCATTGGAGGTGATGAAGGAGATGGTAGAAAGGGGATTGACTCCAACTTTAACTACTTATAATATATTGCTTAAAGGGTATTTCAGAACGGGTCAACTGAAGGAAGCCTGGGATTTCTTTTTGGAAATGAAGGAGAGGAAATGTGATATTGATGTTGTGACCTATACGACCATGGTTCATGGGTTTGGTGTTGTGGGTGAAATTCAGAAAGCTAGAAAGGTTTTTGATCAGATGGTTAGGAATGGTGTTCTTCCTTCAGTAGCAACATACAATGCTTTGATTCAAGTTTTATGTAAGAAGGATAGTGTGGAGAATGCTATATTGGTATTTGAAGAGATGGTAAGAAAGGGCTATGTGCCTAACTCAGTTACTTACAATGTAATTATCAGAGGATTGTGTCATACAGGTGATATGCAAAGGGCCATGGAGTTTATGGTGAGAATGGAGGAAGAAGATGATTGTCAGCCAAATGTTCAGACATATAATGTCATGATACGATACTTCTGCGATGCCGGGGAGATTGAGAAGGGTTTAGAAATGTTAGAGAAGATGAGGAACAGATCATGCTTGCCCAATCTAGACACATATAACATTCTGATCAGTGATTTGTTTGTGAGGAAGAAATCAGATGATTTAGTGGTAGCTGGGAAGTTGTTGATGGAAATGATTGATAGAGGCTTCCTGCCTCGGAAATTTACTTTTAATCGAGTATTAAATGGGCTTCTGTTAACAGGAAATCAAGATTTTGCAAAAGAGATACTGAGATCAGAAAGTAGATGTGGCCGGGTTCCTCGGCATTTGAAGCTCTGA 4443 0.4063 MPGASHTELYSFQSYHNPLYTFVLFIYYKTLAQEFQNEAIKVSTSKCSSSEVSLKFLRAPHAFSHLNSATFAFEALDYGSSSPCTNCSFTCKLDDGIRSVCKATRVIYSSLRDGNHNFEVCANGPQGLGCASYNWTVDTVPPTAYVTASTSFTSALNVSVDVTFSESCIGEGFGCISVNACNLLVYGAGQVLPSSFTVLQPNLKYSLLVSLSPTVQFGRAILVMDKNFCTDMAGNSFTRTQNSSVYVHFDRRWDYVNLRTRVTERLLQLNSEIRTVLATNDYNKLKVFVYFSAPVLNSSSELVKHLSINQGSLLPTSGKTHGNRRFGFLISNISSNTIISVSFNSTSIISRQGIPVAPVAPVTFLYDSMRPSVKLSAYSMRTQEHNVEILINFREISRSIYIIELQADDNVISINVPENVTHDIAGNKNLASNVVQVRHYSSPLISMLISTFATASFGLTSLAAGLLTISTASLQYFGAFSRSSSFLTVDPARSSSPFGSSNPFVSKVPAKIPNMKLIDNLSNSASVYASPLTSSEYQLYFENLNTQPKAEFVSDSRHPSGKRNSEKQKKYGALTFPRFEIFLLFLSLPGICKASTALIRGSSSGMVVGILLLVIVSFVLLSLFLFLSVGITLGKLLQYKEVHQEGQKFHWYQELIRVTLGPGKRGQWTWKELPNSVRLTIFGPLFEDLRGPPKYMLSQFSGGHPQNQGDRIIASEDETEDAEAPFIQKLFGILRIYYVLLESIRRVSFGILVGVYNKTESSKTPTIIILSITAFQLFFVVLKKPFIKKKVQLVEIISLSCEVALFATCITLLNKDFSLGTETKVGIFMLILFLVGFLAHIMNEWYALYRQTRMLDPEEKSFLRGLKIASIGFLLYFIPQRFIKSLESGFPKNHGGDEETRDVTFSDERLKNLGGRRSSGSTDKPWLKQLRELAKASFGKEGSPNDPSTSTTRWSGVWGTNKRSGSSSMNSSSDYKSKPSEDVEVMLKLQNPFHLLHPLKQRFLPPCHSLTTIIQPSPATPPLVEEDFAVAKLILESDTQSLPETLPRTSFQWNPDLVDKVLKRLWNHGPKALQFFKYLERHPTYTHASSSFDYAIDISARMRDYKSVWTLVSRMQACRIGPSPRTFAIITERYVAAGKADRAVKIFLSMHKHGCRQDLNSFNTILDVLCKFKRVEMAYDLFKVFRGRFKADIISYNIIANGWCLIKRTPKALEVMKEMVERGLTPTLTTYNILLKGYFRTGQLKEAWDFFLEMKERKCDIDVVTYTTMVHGFGVVGEIQKARKVFDQMVRNGVLPSVATYNALIQVLCKKDSVENAILVFEEMVRKGYVPNSVTYNVIIRGLCHTGDMQRAMEFMVRMEEEDDCQPNVQTYNVMIRYFCDAGEIEKGLEMLEKMRNRSCLPNLDTYNILISDLFVRKKSDDLVVAGKLLMEMIDRGFLPRKFTFNRVLNGLLLTGNQDFAKEILRSESRCGRVPRHLKL 1480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0481 1480 PANTHER - 513 976 - -
Lele18g0481 1480 MobiDBLite consensus disorder prediction 942 976 - -
Lele18g0481 1480 MobiDBLite consensus disorder prediction 893 914 - -
Lele18g0481 1480 Gene3D Tetratricopeptide repeat domain 1289 1360 IPR011990 GO:0005515
Lele18g0481 1480 Gene3D Tetratricopeptide repeat domain 1044 1185 IPR011990 GO:0005515
Lele18g0481 1480 Pfam Pentatricopeptide repeat domain 1115 1169 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1334 1369 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1371 1403 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1194 1227 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1230 1262 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1264 1297 IPR002885 -
Lele18g0481 1480 TIGRFAM PPR: pentatricopeptide repeat domain 1300 1332 IPR002885 -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1227 1261 IPR002885 -
Lele18g0481 1480 MobiDBLite consensus disorder prediction 937 978 - -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1123 1157 IPR002885 -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1368 1402 IPR002885 -
Lele18g0481 1480 Gene3D Tetratricopeptide repeat domain 1361 1479 IPR011990 GO:0005515
Lele18g0481 1480 SUPERFAMILY HCP-like 1168 1293 - -
Lele18g0481 1480 MobiDBLite consensus disorder prediction 893 923 - -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1192 1226 IPR002885 -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1332 1367 IPR002885 -
Lele18g0481 1480 Gene3D Tetratricopeptide repeat domain 1186 1285 IPR011990 GO:0005515
Lele18g0481 1480 Pfam PPR repeat 1194 1224 IPR002885 -
Lele18g0481 1480 Pfam PPR repeat family 1296 1345 IPR002885 -
Lele18g0481 1480 Pfam PPR repeat family 1367 1414 IPR002885 -
Lele18g0481 1480 Pfam PPR repeat family 1227 1273 IPR002885 -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1297 1331 IPR002885 -
Lele18g0481 1480 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1262 1296 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0481 Lele-ChrLele18 2834043 2842831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0481 1090 1475 Glycosyltransferase AT1G05670 25.840 7.98e-42 164
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0481 18 2834043 2842831 Lele19g0502 19 2884778 2886025 hybridization
Lele18g0481 18 2834043 2842831 Lele20g0954 20 15651500 15652987 hybridization