Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1056 ATGGAATCCAGACCTAGTGGACAAGTCCTCAAACACCTATGGAACCATGGACCCAAAGCACTGCAATTTTTCAAGTACCTTGAACGCCACCAAACCTATACTCATGCCTCGTCATCCTTTGATTACGCCATTGACATTGCAGCTCGTATGCGTGATTACAAGTCTGTTAGGACGCTGGTTGCTCGTATGCGAGCTTGCCGTGTCGGACCAAACCGTCGAACTTTCGCGATCATTACTGAGAGGTATGTCGCTGCTGGTAAAGCCGATAGGGCTGTAAAGATCTTTCTGTCAATGCACAAACATGGTTGTCGTCAGGATTTGAATTCTTTTAACACGATTCTTGATATGCTGTGCAAGTCCAAACGAGTAGAGATGGCTTATGATTTGTTCAAAGTTTTCAGAGTTAGATTTAAGGCTGACATTATCAGTTATAACATAATTGATAACGGTTGGTGCTTGATTAAGCGAACGCCCAAGGCGTTGGAGGTGATGAAGGAGATGGTAGAAAGAGGATTGACTCCAACTGTAACTACTTATAATATATTGCTTAAAGGGTATTTCAGGACGGGTCAACTGAAGGAAGCCTGGGATTTCTGTTTTGAGATGAAGAAGAGGAAATGTGATATTGATGTTGTGACCTATACTACCATGGTTCATGTTTTTGGTGTAGTAGGTGAAATTCAGAAAGCTAGAAAGGTTTTTGATCAGATGGCTAGGGATGGTGTTCTTCCTTCAGTAGCAACATACAATGCTTTGATTCAAGTTTTATGTAAGACGGATAGTGTGGAAAATGCTATATTGGTATTCGAAGAGATGATGAGAAAGGGTTTTGTGCCTAATTCAGTTACTTACAATGTAATTATCAGAGGGTTGTGTCATAAAGGTGATATGCAGAGTGCCATGGAATTTATGGTGAGAATGGAGGAAGAAGATGATTGTCAGCCAAATGTTCAGACATATAATGTCATCATACGATACTTCTGTGATGCCGGTGAGATTGAGAAGGGTTTAGAAATGTTAAATATGAGGAACAGAACTGTAACTGACTCCTTAGAGTTCCCAAATGAGAATGGAAATCGATTTATTTTGTCGTTGGAGAAATGCATTGTATGA 1113 0.4043 MESRPSGQVLKHLWNHGPKALQFFKYLERHQTYTHASSSFDYAIDIAARMRDYKSVRTLVARMRACRVGPNRRTFAIITERYVAAGKADRAVKIFLSMHKHGCRQDLNSFNTILDMLCKSKRVEMAYDLFKVFRVRFKADIISYNIIDNGWCLIKRTPKALEVMKEMVERGLTPTVTTYNILLKGYFRTGQLKEAWDFCFEMKKRKCDIDVVTYTTMVHVFGVVGEIQKARKVFDQMARDGVLPSVATYNALIQVLCKTDSVENAILVFEEMMRKGFVPNSVTYNVIIRGLCHKGDMQSAMEFMVRMEEEDDCQPNVQTYNVIIRYFCDAGEIEKGLEMLNMRNRTVTDSLEFPNENGNRFILSLEKCIV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Lele17g1056 370 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 136 342 - -
Lele17g1056 370 Pfam PPR repeat 109 131 IPR002885 -
Lele17g1056 370 Pfam PPR repeat 142 172 IPR002885 -
Lele17g1056 370 Pfam PPR repeat 82 103 IPR002885 -
Lele17g1056 370 Pfam PPR repeat 312 341 IPR002885 -
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 71 105 IPR002885 -
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 109 131 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 143 175 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 248 281 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 319 341 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 178 210 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 282 317 IPR002885 -
Lele17g1056 370 TIGRFAM PPR: pentatricopeptide repeat domain 212 245 IPR002885 -
Lele17g1056 370 Gene3D Tetratricopeptide repeat domain 224 353 IPR011990 GO:0005515
Lele17g1056 370 Gene3D Tetratricopeptide repeat domain 121 222 IPR011990 GO:0005515
Lele17g1056 370 Gene3D Tetratricopeptide repeat domain 9 120 IPR011990 GO:0005515
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 175 209 IPR002885 -
Lele17g1056 370 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 315 IPR002885 -
Lele17g1056 370 SUPERFAMILY HCP-like 155 248 - -
Lele17g1056 370 Pfam PPR repeat family 174 220 IPR002885 -
Lele17g1056 370 Pfam PPR repeat family 244 293 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1056 Lele-ChrLele17 21118606 21120014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1056 73 350 Miscellaneous Gene Families AT4G11690 26.132 6.51e-28 112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1056 17 21118606 21120014 Lele19g0502 19 2884778 2886025 hybridization
Lele17g1056 17 21118606 21120014 Lele20g0954 20 15651500 15652987 hybridization