Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0844 ATGGCGTCGAGCATAGGTATCATGGACAGTGCTTACTTTGTCGGCCGGAATGAGATTTTGACCTGGATCAACAAAAGACTTCAACTCAATCTCTCGCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCATAAGGTGAATTTTGATGCGAAATCAGAGTATGATATGATCCAGAATTACAAAATTCTTCAGGAAGTATTCAACAAGCTGAAGATTGAGAAGCATATTGAGGTTAACAGGCTTGTTAAAGGCCGACCTTTGGACAATCTGGAATTTCTACAATGGCTGAAACGTTATTGTGACTCTGTTAATGGTGGCATTATGAATGAGAATTATAACCCTGTGGAGCGCAGGAGTAAGTGTGGAAAGACTCTTAAGAGTTCTTCAAAGACCTCAAAATCACTACAAACAAACGTTGTTAATAATTCTGTTTCAGGCAACACACTCGGTCCTAATAGAACCTCTGGGCCCATGCAACACAGGTCAAGTGGTGCAGCAGGCGTGGCTAATTCGTCAGCAGATATTCAAGCTTTGTCCAAGGAGATAACTGATCTCAAACTCTCTGTGGATATCCTGGAAAAAGAAAGAGACTTTTACTATGCAAAACTGAGGGACATAGAAATTCTTTGTCAGACTCCACAACTGGAGAATGGACCTATGTCTGTAGCAATCAAGAAGATTTTGTATGCTGCTGATGCAAAGGAGTCAGCGTTAGATGAAGCTCAGGATTACCTTAATCAAGTTTTGGAAGCTGCTCAATCTGAAGAAGCAGAAGAAGAAGAAGAAGAAGACGAAAAAGAAGCAGAAGCAGAAATTAAAGCCTAA 867 0.4152 MASSIGIMDSAYFVGRNEILTWINKRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKSEYDMIQNYKILQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRSKCGKTLKSSSKTSKSLQTNVVNNSVSGNTLGPNRTSGPMQHRSSGAAGVANSSADIQALSKEITDLKLSVDILEKERDFYYAKLRDIEILCQTPQLENGPMSVAIKKILYAADAKESALDEAQDYLNQVLEAAQSEEAEEEEEEDEKEAEAEIKA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0844 288 FunFam RP/EB family microtubule-associated protein 6 134 - -
Lele20g0844 288 Gene3D - 179 261 - -
Lele20g0844 288 Pfam EB1-like C-terminal motif 206 244 IPR004953 GO:0008017
Lele20g0844 288 MobiDBLite consensus disorder prediction 266 288 - -
Lele20g0844 288 FunFam Microtubule-associated protein RP/EB family member 1B 187 262 - -
Lele20g0844 288 Gene3D - 6 134 IPR036872 -
Lele20g0844 288 MobiDBLite consensus disorder prediction 139 182 - -
Lele20g0844 288 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 181 251 IPR004953 GO:0008017
Lele20g0844 288 Coils Coil 252 288 - -
Lele20g0844 288 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Lele20g0844 288 Coils Coil 189 209 - -
Lele20g0844 288 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Lele20g0844 288 SUPERFAMILY EB1 dimerisation domain-like 189 247 IPR036133 GO:0008017
Lele20g0844 288 MobiDBLite consensus disorder prediction 267 281 - -
Lele20g0844 288 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Lele20g0844 288 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 273 IPR027328 GO:0008017
Lele20g0844 288 MobiDBLite consensus disorder prediction 137 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0844 Lele-ChrLele20 15099961 15102645 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0954 17 20534617 20537445 Lele20g0844 20 15099961 15102645 hybridization
Lele18g0575 18 3402015 3404668 Lele20g0844 20 15099961 15102645 hybridization