Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0575 ATGGCGTCGAGCATAGGTATCATGGACAGTGCTTACTTTGTAGGCCGGAATGAGATTTTGACCTGGATCAACAAAAGACTTCAACTCAATCTCTCGCGCATTGAGGAGGCTGCATCTGGTGCTGTACAATGCCAGATGATGGACATGACATATCCAGGGGTTGTTCCAATGCATAAGGTGAATTTTGATGCGAAATCAGAGTATGATATGATCCAGAATTACAAAATTCTTCAGGAAGTATTCAACAAGCTGAAGATTGAGAAGCATATTGAGGTTAACAGGCTTGTTAAAGGCCGACCTTTGGACAATCTGGAATTTCTACAATGGCTGAAACGTTATTGTGACTCTGTTAATGGCGGCATTATGAATGAGAATTATAACCCTGTGGAGCGCAGGAGTAAGTGTGGAAAGACTCTTAAGAGTTCTTTGAAGACCTCAAAATCACTACAAACAAACGTTGTTAATAATTCTGTTTCAGGAAACACACTCGGTCCTAATAGAACCTCTGGGCCCATGCAACACAGGTCAAGTGGTGCAGCAGGCGTGGCTCATTCGTCAGCAGATATTCAAGCTTTGTCCAAGGAGATAACTGATCTCAAACTCTCTGTGGATATCCTGGAAAAAGAAAGAGACTTTTACTATGCAAAACTGAGGGACATAGAAATTCTCTGTCATACTCCACAACTGGAGAATGGACCTATGTCTGTAGCAATCAAGAAGATTTTGTATGCTGCTGATGCAAAGGAGTCAGCGTTAGATGAAGCTCAGGATTACCTTAATCAAGTTTTGGAAGCTGCTCAATCTGAAGAAGAAGAAGCAGAAGCAGAAGCAGAAATTAAAGCCTGA 846 0.4184 MASSIGIMDSAYFVGRNEILTWINKRLQLNLSRIEEAASGAVQCQMMDMTYPGVVPMHKVNFDAKSEYDMIQNYKILQEVFNKLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRSKCGKTLKSSLKTSKSLQTNVVNNSVSGNTLGPNRTSGPMQHRSSGAAGVAHSSADIQALSKEITDLKLSVDILEKERDFYYAKLRDIEILCHTPQLENGPMSVAIKKILYAADAKESALDEAQDYLNQVLEAAQSEEEEAEAEAEIKA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0575 281 FunFam Microtubule-associated protein RP/EB family member 1B 187 262 - -
Lele18g0575 281 Pfam EB1-like C-terminal motif 206 244 IPR004953 GO:0008017
Lele18g0575 281 MobiDBLite consensus disorder prediction 155 175 - -
Lele18g0575 281 SUPERFAMILY EB1 dimerisation domain-like 189 247 IPR036133 GO:0008017
Lele18g0575 281 FunFam RP/EB family microtubule-associated protein 6 134 - -
Lele18g0575 281 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 6 270 IPR027328 GO:0008017
Lele18g0575 281 ProSiteProfiles Calponin homology (CH) domain profile. 13 115 IPR001715 GO:0005515
Lele18g0575 281 MobiDBLite consensus disorder prediction 155 178 - -
Lele18g0575 281 Coils Coil 189 209 - -
Lele18g0575 281 SUPERFAMILY Calponin-homology domain, CH-domain 5 132 IPR036872 -
Lele18g0575 281 Coils Coil 252 276 - -
Lele18g0575 281 Gene3D - 179 278 - -
Lele18g0575 281 Gene3D - 6 134 IPR036872 -
Lele18g0575 281 Pfam Calponin homology (CH) domain 16 114 IPR001715 GO:0005515
Lele18g0575 281 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 181 251 IPR004953 GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0575 Lele-ChrLele18 3402015 3404668 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0575 18 3402015 3404668 Lele19g0604 19 3475681 3478221 hybridization
Lele18g0575 18 3402015 3404668 Lele20g0844 20 15099961 15102645 hybridization