Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0628 ATGGCGAAATTGAAGATTGCCGGCACATGGGTTGGTGTGTTGGAGGTTGAACTCGAGACTTGTACGCTACCAATGCTGAGGGAAGAAATCGCCAAGCGATCCAACTGCGGCGTCGACTCCATCAATTTGATATGTGCAGGAAAATTTTTAAAAGACGGTGATGGCCAAGAGAAATTGAGCCAACTAGGTATAAAAAATAACGCCAGAATTCTTGCGAATCGTATCAGTGTTGAAGAAGGCAAGGTTTTGATGGCCGAGGAGGAACGCACTCGCAGACTGTCCAGAGTCAAGGCTGCTGCCACAGCGCTCGCCGAAAGGCATGCTGATGGCTCATTACCTATGGAAGACTTCAACATAGAAGTTGAAGATCAAAGTGGACAAAAAGTGCAGTTAGGTTCTGAGACTGATCAGAGGGCAGTAATGATGGGACTGATGCTTCATGCAAATGGAAAACGTCTTATCAGACAGCAAAATTACAATGATGCTCTAGAAGTGCTCTCCATGGGTGAGGAGTCATTCTCTCTCTGTGATCCAAAGGTCCTTGAGCTTGTCGACAATGTTCCAATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATCCGAGACATCAGATGGCTATCAGATGCTGGAAAGCGTCTTGAAATGGCTAGGGCTGGAATTGAGCGTGCTCATGGAAAGGATTCCCGGCGCCTTAGACTTCTACAGGGGGGTCGCTATCCTGAACTTGCATTGCATTTAAGATTAGAGCTACTTGAAGGGGTGGTGGCTTATCATAGTGGTAAGTTTGATAAAGCAAGAGATGCGCTGACTTCTGCAAAAGCAAAATTCATGCAGCTGCAAGTGCCAGATGAAACCTTATCATTTGTTATGAGCATGGGATTCAAAGAGCGTGATGTAAAGAGAGCATTACGGATGAACAATCAAGATGTGGGAGGTGCCATTGATTTCCTTGAGGAGGAGAAGGCAAAAAAACAGCGAAAACGGGAAGAAGATATAAAGAGAAGAAATGAAATTAGGGAACAAAAGCTTTATGGGTTGACACCATTAAAGAAAGCCGTGGATCTGCAGAAGTTGAAGGATTTGACCTCTTTGGGATTTGAGAAGGAACTTGCTGCTGAAGCCCTCCGAAGAAATGAAAATGATTTTGATAAGGCATTGAATGATTTGACAAGTCCAGAAACAAATTCTGCTATGCAGGTTCACATCGAGACAAGGAAGACAAAACGGCAGAAGCAATCAAAAGAGTCTCAAATTGAAAATCTTGTCCGCATGGGTTTTGAAAGATCAAGAGTGGTATCTGCTGTTGAGGCTGGGGGCACTTTGGATCAAATAATGCAAATACTGACTGCACAACCTGAGGAAAACATGCAAATCGAAGCAAGTTCAACTGCGAGCACTGCGAGTTCTTCTGCTCCCTTGCCGGATAACATTGGTTCCAACATTCCAGATCTAACTGAGGACGTTGAAGGTCTCTCAGAAGATCTCAGCAAAGCAGAGGAGCGAGATGTGGAAATGGAAGATGAACTTTCTGCAGATATAGCAAAAGCTGATGCGTTGGCTGACTATGATATCGAAGTTAATATAGAAGGGGAAGCCATAACAGAATATCTGTCTCTGTTGGAATCAGCAGGCGGTAGCAGTGGGCAAAAGTTGCCTTCTCAGTAA 1668 0.4436 MAKLKIAGTWVGVLEVELETCTLPMLREEIAKRSNCGVDSINLICAGKFLKDGDGQEKLSQLGIKNNARILANRISVEEGKVLMAEEERTRRLSRVKAAATALAERHADGSLPMEDFNIEVEDQSGQKVQLGSETDQRAVMMGLMLHANGKRLIRQQNYNDALEVLSMGEESFSLCDPKVLELVDNVPILQIDMVWCYFMIRDIRWLSDAGKRLEMARAGIERAHGKDSRRLRLLQGGRYPELALHLRLELLEGVVAYHSGKFDKARDALTSAKAKFMQLQVPDETLSFVMSMGFKERDVKRALRMNNQDVGGAIDFLEEEKAKKQRKREEDIKRRNEIREQKLYGLTPLKKAVDLQKLKDLTSLGFEKELAAEALRRNENDFDKALNDLTSPETNSAMQVHIETRKTKRQKQSKESQIENLVRMGFERSRVVSAVEAGGTLDQIMQILTAQPEENMQIEASSTASTASSSAPLPDNIGSNIPDLTEDVEGLSEDLSKAEERDVEMEDELSADIAKADALADYDIEVNIEGEAITEYLSLLESAGGSSGQKLPSQ 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0628 555 MobiDBLite consensus disorder prediction 491 510 - -
Lele20g0628 555 MobiDBLite consensus disorder prediction 457 477 - -
Lele20g0628 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 393 IPR015940 -
Lele20g0628 555 Gene3D - 10 83 - -
Lele20g0628 555 SMART uba_6 283 320 IPR015940 -
Lele20g0628 555 SMART uba_6 415 451 IPR015940 -
Lele20g0628 555 SMART uba_6 355 392 IPR015940 -
Lele20g0628 555 Gene3D - 259 324 - -
Lele20g0628 555 Gene3D - 357 393 - -
Lele20g0628 555 ProSiteProfiles Ubiquitin domain profile. 22 70 IPR000626 GO:0005515
Lele20g0628 555 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 2 545 IPR039749 -
Lele20g0628 555 SUPERFAMILY UBA-like 275 321 IPR009060 GO:0005515
Lele20g0628 555 Coils Coil 482 509 - -
Lele20g0628 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 281 321 IPR015940 -
Lele20g0628 555 SUPERFAMILY Ubiquitin-like 20 71 IPR029071 -
Lele20g0628 555 SUPERFAMILY UBA-like 351 393 IPR009060 GO:0005515
Lele20g0628 555 CDD UBA 359 388 - -
Lele20g0628 555 Gene3D - 412 475 - -
Lele20g0628 555 MobiDBLite consensus disorder prediction 457 510 - -
Lele20g0628 555 Coils Coil 315 335 - -
Lele20g0628 555 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 413 438 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0628 Lele-ChrLele20 13540944 13544819 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0729 17 18989628 18993496 Lele20g0628 20 13540944 13544819 hybridization
Lele18g0792 18 4962616 4968367 Lele20g0628 20 13540944 13544819 hybridization