Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0729 ATGGCGAAATTGAAGATTGCCGGCACATGGGCAGGAGTGTTAGAGGTTCAACTCGAGACTTGGACGCTGCCAATGTTGAGGGAAGAAATCGCCAAGCGATCCAACTGCGGCGTCGACTCCATCAATTTGATATGTGCCGGAAAAATTTTGAAAGACGGTGATGGCCAAGAGAAATTGAGCCAACTAGGTATCAAAAATAACGCCAGGATTCTTGCGAGTCGTATCAGTGCCGAAGAAGGCAAGGTTTTGATGGCCGAGGAGGAACGCGCTCGCAGATTGTCCCGAGTCAAGGCAGCTGCCACAGCACTCGCCAAAAGGCATGCTGATGGCTCATTACCTATGGAGGACTTCAACATAGAAGTTGAAGATCAAAGTGGACAAAAAGTGCAGTTAGGTTCTGAGACTGATCAGAGGGCAGTAATGATGGGACTGATGCTTCATGCAAATGGAAAACGTCTTATCAGACAGCAAAATTACAATGATGCTTTAGAAGTGCTCTCTATGGGCGAGGAGTCGTTCTCTCTCTGTGATCCAAAGGTCCTTGAGCTTGTTGACAATGTTCCAATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATCCGAGACATCAGATGGCTATCAGAGGCTGGAAAACGTCTTGAAATGGCTAGGGCTGGAATTGAGCGTGCTCATGGAAAGGATTCCCTGCGCCTTAGACTTCTACAGGGAGGTCGCTATCCTGAACTTGCATTGAATTTAAGACTAGAGCTACTTGAAGGGGTGGTGGCTTATCACAGTGGCAAGTTGGATAAAGCAAGAGATGCGCTGACCTCTGCAAAAGCAAAATTCATCCAGCTGCAAGTGCCAGACGAAGCCTTATCATTTGTTATGAGCATGGGATTCAAAGAGCGTGATGTAAAAAGAGCATTACGGATGAACAATCAAGAGTTGGGAGGTGCCATTGATTTCCTTGAGGAGGAGAAGGCAAAGAAACAGCAAAAACGGGAAGAAGATATAAAGAGACGAAACGAAATTAGGGAACAAAAGCGTTATGGGTTGACACCATTAAAGAAAGCCGTGGATATGCAGAAGTTGAAGGATTTGGTCTCTTTGGGATTTGAGAAGGAACTTGCTGCTGAAGCCCTTCGAAGAAATGAAAATGATTTTGATAAGGCATTGAATGATTTGACAAGCCCGGAAACTAATTCTGCTATGCAGGTTCACATCGAGACAAGGAAAACAAAACGGCAGAGGCAATCAAAAGAGTCTCAAATTGCAAATTTGGTCCGCATGGGGTTTGAAAGATCAAGAGTGGTATCTGCTGTCGAGGCTGGTGGCACTTTGGATCAAATAATGCAAATACTGACTGCGCAACCCGAGGAAGCAAGTTCAACTGATAATCCTGCTAGTTCTTCTGCTCCCCTGTCAGATAACATTGGTTCCAACGTTCCAGAACTAACTGAGGACGTTGAAGGTCTATCAGAAGATCTCAGCAAAGCGGAGGAGCGAGATGTGGAAATGGAAGATGAGCTTTCTGCAGATATAGCAAAAGCTGATGCTTTGACTGACTATGATATCGAAGTTAATATAGAAGGGGAAGCCATAACGGAATATCTGTCTCTGTTGGAGTCAGCAGGCAGCAGCAGTGGGCAAAAGTTGCCTTCTCAGTGA 1653 0.4537 MAKLKIAGTWAGVLEVQLETWTLPMLREEIAKRSNCGVDSINLICAGKILKDGDGQEKLSQLGIKNNARILASRISAEEGKVLMAEEERARRLSRVKAAATALAKRHADGSLPMEDFNIEVEDQSGQKVQLGSETDQRAVMMGLMLHANGKRLIRQQNYNDALEVLSMGEESFSLCDPKVLELVDNVPILQIDMVWCYFMIRDIRWLSEAGKRLEMARAGIERAHGKDSLRLRLLQGGRYPELALNLRLELLEGVVAYHSGKLDKARDALTSAKAKFIQLQVPDEALSFVMSMGFKERDVKRALRMNNQELGGAIDFLEEEKAKKQQKREEDIKRRNEIREQKRYGLTPLKKAVDMQKLKDLVSLGFEKELAAEALRRNENDFDKALNDLTSPETNSAMQVHIETRKTKRQRQSKESQIANLVRMGFERSRVVSAVEAGGTLDQIMQILTAQPEEASSTDNPASSSAPLSDNIGSNVPELTEDVEGLSEDLSKAEERDVEMEDELSADIAKADALTDYDIEVNIEGEAITEYLSLLESAGSSSGQKLPSQ 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0729 550 SMART uba_6 355 392 IPR015940 -
Lele17g0729 550 SMART uba_6 283 320 IPR015940 -
Lele17g0729 550 SMART uba_6 415 451 IPR015940 -
Lele17g0729 550 ProSiteProfiles Ubiquitin domain profile. 22 70 IPR000626 GO:0005515
Lele17g0729 550 MobiDBLite consensus disorder prediction 486 505 - -
Lele17g0729 550 SUPERFAMILY Ubiquitin-like 20 70 IPR029071 -
Lele17g0729 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 413 438 IPR015940 -
Lele17g0729 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 281 321 IPR015940 -
Lele17g0729 550 MobiDBLite consensus disorder prediction 453 505 - -
Lele17g0729 550 SUPERFAMILY UBA-like 350 393 IPR009060 GO:0005515
Lele17g0729 550 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 353 393 IPR015940 -
Lele17g0729 550 CDD UBA 359 388 - -
Lele17g0729 550 Coils Coil 301 335 - -
Lele17g0729 550 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 2 541 IPR039749 -
Lele17g0729 550 Coils Coil 477 504 - -
Lele17g0729 550 SUPERFAMILY UBA-like 275 322 IPR009060 GO:0005515
Lele17g0729 550 Gene3D - 9 83 - -
Lele17g0729 550 Gene3D - 356 393 - -
Lele17g0729 550 MobiDBLite consensus disorder prediction 453 477 - -
Lele17g0729 550 Gene3D - 412 478 - -
Lele17g0729 550 Gene3D - 260 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0729 Lele-ChrLele17 18989628 18993496 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0729 17 18989628 18993496 Lele19g0829 19 4998806 5002697 hybridization
Lele17g0729 17 18989628 18993496 Lele20g0628 20 13540944 13544819 hybridization