Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0792 ATGATTCTGAGAACAGCACCATTCCTCTGTCGAAATTCTGTGTGCTTTGCGATGGCGAAATTGAAGATTGCCGGCACATGGGTTGGTGTGTTGGAGGTTGAACTCGAGACTTGGACGCTACCAATGTTGAGGGAAGAAATAGCCAAGCGATCCAACTGCGGCGTCGACTCCATCAATTTGATATGTGGAGGAAAATTTTTAAAAGACGGTGATGGCCAAGAGAAATTGAGCCAACTAGGTATAAAAAATAACGCCAGAATTCTTGCGAGTCGTATCAGTGTTGAAGAAGGCAAGGTTTTGATGGCCGAGGAGGAACGCACTCGCAGACTGTCCCGAGTCAAGGCTGCTGCCACAGCACTCGCCAAAAGGCATGCTGATGGTTCATTACCTATGGAAGACTTCAACATAGAAGTTGAAGATCAAAGTGGACAAAAAGTGCAGTTAGGTTCTGAGACTGATCAGAGGGCAGTAATGATGGGACTGATGCTTCATGCAAATGGAAAACGTCTTATCAGACTGCAAAATTACAATGATGCTCTAGAAGTGCTCTCTATGGGTGAGGAGTCATTCTCTCTTTGTGATCCAAAGGTCCTTGAGCTTGTTGACAATGTTCCAATACTGCAAATAGACATGGTGTGGTGCTACTTTATGATCCGAGACATCAGATGGCTATCAGATGCTGGAAAGCGTCTTGAAATGGCTAGGGCTGGAATTGAGCGTGCTCATGGAAAGGATTCCCGGCGCCTTAGACTTCTACAGGGGGGTCGCTATCCTGAACTTGCATTGCATTTAAGATTAGAGCTACTTGAAGGGGTGGTGGCTTATCACAGTGGTAAGTTAGATAAAGCAAGAGATGCGCTGACTTCTGCAAAAGCAAAATTCATCCAGCTGCAAGTGCCAGATGAAGCCTTGTCATTTGTTATGAGCATGGGATTCAAAGAGCGTGATGTAAAGAGAGCATTACGGATGAACAATCAAGATGTGGGTGGTGCCATTGATTTCCTTGAGGAGGAGAAGGCAAAAAAACAGCGAAAACGGGAAGAAGATATAAAGAGAAGAAATGAAATTAGGGAACAAAAGCGTTATGGGTTGACACCATTAAAGAAAGCCGTGGATCTGCAGAAGTTGAAGGATTTGGCCTCTTTGGGATTTGAGAAGGAACTTGCTGCTGAAGCCCTCCGAAGAAATGAAAATGATTTTGATAAGGCATTGAATGATTTGACAAGTCCAGAAACAAATTCTGCTATGCAGGTTCACATCGAGACAAGGAAAACAAAACGGCAGAGGCAATCAAAAGAGTCTCAAATTGAAAATCTTGTCCGCATGGGGTTTGAAAGATCAAGAGTGGTGTCTGCTGTTGAGGTTGGTGGCACTTTGGATAAAATAATGCAAATACTGACTGCACAACCCGAGGAAAACATGCAAATCGAAGCAAGTTCAACTTCGAGCACTGCGAGTTCTTCTGCTCCCTTGCCAGATAACATTGGTTCCAACATTCCAGATCTAACTGAGGACGTTGAAGGTCTCTCAGAAGATCTCAGCAAAGCAGAGGAGCGAGATGTGGAAATGGAAGATGAACTTTCTGCAGATATAGCAAAAGCTGATGCGTTGGCTGACTATGATATCGAAGTTAATATAGAAGGGGAAGCCATAACAGAATATCTGTCTCTGTTGGAATCAGCAGGCGATAGCAGTGGGCAAAGGTTGCCTTCTCAGTAA 1719 0.4427 MILRTAPFLCRNSVCFAMAKLKIAGTWVGVLEVELETWTLPMLREEIAKRSNCGVDSINLICGGKFLKDGDGQEKLSQLGIKNNARILASRISVEEGKVLMAEEERTRRLSRVKAAATALAKRHADGSLPMEDFNIEVEDQSGQKVQLGSETDQRAVMMGLMLHANGKRLIRLQNYNDALEVLSMGEESFSLCDPKVLELVDNVPILQIDMVWCYFMIRDIRWLSDAGKRLEMARAGIERAHGKDSRRLRLLQGGRYPELALHLRLELLEGVVAYHSGKLDKARDALTSAKAKFIQLQVPDEALSFVMSMGFKERDVKRALRMNNQDVGGAIDFLEEEKAKKQRKREEDIKRRNEIREQKRYGLTPLKKAVDLQKLKDLASLGFEKELAAEALRRNENDFDKALNDLTSPETNSAMQVHIETRKTKRQRQSKESQIENLVRMGFERSRVVSAVEVGGTLDKIMQILTAQPEENMQIEASSTSSTASSSAPLPDNIGSNIPDLTEDVEGLSEDLSKAEERDVEMEDELSADIAKADALADYDIEVNIEGEAITEYLSLLESAGDSSGQRLPSQ 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0792 572 Gene3D - 374 410 - -
Lele18g0792 572 SUPERFAMILY UBA-like 368 410 IPR009060 GO:0005515
Lele18g0792 572 Coils Coil 332 352 - -
Lele18g0792 572 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 19 562 IPR039749 -
Lele18g0792 572 ProSiteProfiles Ubiquitin domain profile. 39 87 IPR000626 GO:0005515
Lele18g0792 572 Coils Coil 499 526 - -
Lele18g0792 572 Gene3D - 429 492 - -
Lele18g0792 572 Gene3D - 19 100 - -
Lele18g0792 572 MobiDBLite consensus disorder prediction 474 527 - -
Lele18g0792 572 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 298 338 IPR015940 -
Lele18g0792 572 SMART uba_6 372 409 IPR015940 -
Lele18g0792 572 SMART uba_6 432 468 IPR015940 -
Lele18g0792 572 SMART uba_6 300 337 IPR015940 -
Lele18g0792 572 SUPERFAMILY Ubiquitin-like 31 90 IPR029071 -
Lele18g0792 572 CDD UBA 376 405 - -
Lele18g0792 572 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 430 454 IPR015940 -
Lele18g0792 572 Gene3D - 277 352 - -
Lele18g0792 572 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 370 410 IPR015940 -
Lele18g0792 572 MobiDBLite consensus disorder prediction 508 527 - -
Lele18g0792 572 MobiDBLite consensus disorder prediction 474 494 - -
Lele18g0792 572 SUPERFAMILY UBA-like 292 338 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0792 Lele-ChrLele18 4962616 4968367 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0792 18 4962616 4968367 Lele19g0829 19 4998806 5002697 hybridization
Lele18g0792 18 4962616 4968367 Lele20g0628 20 13540944 13544819 hybridization