Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0465 ATGTCTGTTTCCATGAGAGATTTGGATCCAGCTTTCCAGGGAGCTGGACAAAAGGCGTATCCTGAATCTAGTAAGCGTACATATTTTGGACTTGAAATATGGCGCATTGAGAATTTAAAATCAGTTTCTGTTCCTACCTCCTCCTATGGGAAGTTTTACACTGGGGATTCCTACGTGATCTTGAAGACAACAGCTTCAAAAAGTGGTGCACTGCGTCATGATATCCATTACTGGCTGGGTAAAGACACCAGTCAGGATGAAGCTGGTGTTGCGGCCATTAAAACCATTGAGCTGGATGCAGCTCTTGGAGGACGCGCTGTTCAGTATCGCGAATCACAGGGTCATGAAACTGAAAAGTTATTGTCTTATTTTAAACCATGTATAATTCCTCTAGAAGGTGGAGTTGCCTCTGGTTTTAAACATGTTCCTTTTGCAAGATCAACACTCACCCATGATGATGTTTTTATTCTGGATACTCAATCTAAAATCTTTCAATTTAATGGTTCTAATTCATCTATCCAAGAAAGGGCTAAAGCATTGGAAGTTCTACAGTATATAAAGGATAACTACCATGATGGGAAATGTGAGGTTGCCTCTGTTGAGGATGGAAGGTTGATGGCTGATGCTGATGCTGGAGAATTTTGGGCCGTCTTCGGGGGCTTTGCTCCTCTTCCTCGGAAAACAGCCAGTGATGATGATAATACTGATGATTCTCAGCCTCCAAAGCTGCTATGTGTTGTGAAGGGGCAGGCAGAACCTATTGAGAGTGATTCTTTGACAAGAGAACTACTAGATACAAATAAATGTTATATTCTTAATTGTGGTTTGGAAGTTTTTGTTTGGACGGGAAGAAACACATCTCTTGATGAAAGAAAAAGTGCAAGTGCAGCTGCAGAAGAATTAATCAGTGGCCCTGATCGACAAAAATCCCACATTGTTCGTGTGATTGAAGGATTTGAAACTGTGATGTTCAAGTCCAAATTTGATTCTTGGCCTCAAGCACCTAATGTAACTGTGTCAGAAGATGGTCGTGGCAGGGTGGCAGCACTTCTAAAGCGTCAAGGAGTGGATGTCAAGGGTCTTTTGAAAGTTGATCCAGTAAAAGAAGAACCTCAACCCCACATTGATTGCACAGGACGTTTGCAGGTTTGGCGAGTGAATGGCAAGGAAAAGGTTCTTCTTCAAGATTCTGATCATTCAAAACTTTATAGTGGTGATTGCTATGTCTTTCTCTACTCATATCCAGGAGAAGACCGAGAAGAGCATCTTGTAATGACATGGATTGGAAAAAACAGTGTCGAGGAAGAAAGAGCTTCATCTATTTCAATGGCAAGCAAAATTGTTGAATCAATGAAGTATATTCCTGCCCAGGCTCGAATTTATGAAGGGAATGAACCAATTCAGTTTTATTCTATCCTCCAAAGCTTAATTGTTTTCCAGGGTGGTCTTAGTGATGGATATAAGAATTACATTACGGAGAAGGAAATTCCAGATGACACTTACAAGGAAGATGGTGTAGCACTGCTCCGAATCCAGGGCTCTGGACCTGAAAGTATGCAAGCCATACAAGTTGAAACAGTTGCTTCCTCCTTGAATTCCTCATATTGCTACATACTTCATGATGGGCACACAGTGTTCACTTGGCTTGGAAGCCTTACAAACTCAGATGACCATGAACTAGTTGAGAGGATGCTAGATTTGATAAAGCTGATATTGGTTAATGTTTCAGATCTCAACTTTGAGTTTCTGAACATTTTGAACTTTCAGGAGCCAGAATTACAAACAAAACCACAAAAGGAAGGTTCAGAGTCTGAACAGTTTTGGGATTTGTTAGGAGGAAAATCAGAATATCCCAGTCAAAAGATTGCAAGGGATGCCGAAGGTGATCCTCGCCTATTTTCTTGCAACTTCTCAAAAGAAAATTTGAAGGTGACAGAAGTATACAACTTTTCCCAGGATGATTTAATGACTGAAGATATTATGATCTTGAATTGTCACTCAGAAATCTTTGTCTGGATTGGCCAGCAGATTGACCTCAAGAGTAGAACAAAAGCTCTAACAATTGGTGAGAAATTTCTTGAGCATGATTTTTGTATGGAAAATTTATCTCGTGAAGCTCCCATATATGTTGTCATGGAAGGGAGTGAACCACCTTTCTTCACTCGTTTCTTCAAATGGGAGTGTGCAAAATCTGCAAGACCAAAACGGAGAACAACAGCGTCTTATGGAGGAAGGTCCGGTGGTGCACCGGAAAAAGCCCAGCGATCTCGCAGTGTGTGCGCTACTCCTGATCGTGTCCGTGTGAGAGGCAGGTCTCCAGCCTTTAATGCATTAGCAGCTGCATTTGAAGGTCCCAAGGACAGAAACCTTTCAACTCCACCTCCTATGGTTAGAAAGCTGTATGCAAAATCTCTGACACCAGACTCAGCAACATTGGCACCCAAATCTGCAGTTATAGCTGCACTTAGTTCTAGTTTTGAACCATTCCGTCCATCAAAAGACAATTTCATCCCTCGATCATTCAAAGTGAACAAAGAGGCCACAAAGCCAGAGACAAGCAAAGGGAAAGATTCTATGAGCAGTATACAAGAAGATGTGAAAGAGGGTGAAGCTGAAGATGATGAAGGTCTCCCAGTTTATCCATATGAACGCCTCAAAATAGGATCTGAAGATCCTGTAGCAGACATTGATGTGACCAGGAGAGAGGCTTATATGTCAGCTGAGGAGTTCAAAGAGAAGTTTGGGATGACAAAAAAGGATTTCTACAAGTTGCCCAAATGGAAACAGAACAAACTCAAGATGACCATTCAGTTATTTTGA 2820 0.4149 MSVSMRDLDPAFQGAGQKAYPESSKRTYFGLEIWRIENLKSVSVPTSSYGKFYTGDSYVILKTTASKSGALRHDIHYWLGKDTSQDEAGVAAIKTIELDAALGGRAVQYRESQGHETEKLLSYFKPCIIPLEGGVASGFKHVPFARSTLTHDDVFILDTQSKIFQFNGSNSSIQERAKALEVLQYIKDNYHDGKCEVASVEDGRLMADADAGEFWAVFGGFAPLPRKTASDDDNTDDSQPPKLLCVVKGQAEPIESDSLTRELLDTNKCYILNCGLEVFVWTGRNTSLDERKSASAAAEELISGPDRQKSHIVRVIEGFETVMFKSKFDSWPQAPNVTVSEDGRGRVAALLKRQGVDVKGLLKVDPVKEEPQPHIDCTGRLQVWRVNGKEKVLLQDSDHSKLYSGDCYVFLYSYPGEDREEHLVMTWIGKNSVEEERASSISMASKIVESMKYIPAQARIYEGNEPIQFYSILQSLIVFQGGLSDGYKNYITEKEIPDDTYKEDGVALLRIQGSGPESMQAIQVETVASSLNSSYCYILHDGHTVFTWLGSLTNSDDHELVERMLDLIKLILVNVSDLNFEFLNILNFQEPELQTKPQKEGSESEQFWDLLGGKSEYPSQKIARDAEGDPRLFSCNFSKENLKVTEVYNFSQDDLMTEDIMILNCHSEIFVWIGQQIDLKSRTKALTIGEKFLEHDFCMENLSREAPIYVVMEGSEPPFFTRFFKWECAKSARPKRRTTASYGGRSGGAPEKAQRSRSVCATPDRVRVRGRSPAFNALAAAFEGPKDRNLSTPPPMVRKLYAKSLTPDSATLAPKSAVIAALSSSFEPFRPSKDNFIPRSFKVNKEATKPETSKGKDSMSSIQEDVKEGEAEDDEGLPVYPYERLKIGSEDPVADIDVTRREAYMSAEEFKEKFGMTKKDFYKLPKWKQNKLKMTIQLF 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0465 939 Pfam Villin headpiece domain 904 939 IPR003128 GO:0003779|GO:0007010
Lele20g0465 939 Gene3D Severin 18 139 IPR029006 -
Lele20g0465 939 MobiDBLite consensus disorder prediction 842 877 - -
Lele20g0465 939 Gene3D Severin 235 341 IPR029006 -
Lele20g0465 939 Gene3D Severin 509 621 IPR029006 -
Lele20g0465 939 SUPERFAMILY VHP, Villin headpiece domain 865 939 IPR036886 GO:0003779|GO:0007010
Lele20g0465 939 FunFam Gelsolin 17 141 - -
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 498 622 - -
Lele20g0465 939 SMART VILL_6 29 127 IPR007122 GO:0051015
Lele20g0465 939 SMART VILL_6 241 331 IPR007122 GO:0051015
Lele20g0465 939 SMART VILL_6 128 221 IPR007122 GO:0051015
Lele20g0465 939 SMART VILL_6 506 614 IPR007122 GO:0051015
Lele20g0465 939 SMART VILL_6 379 476 IPR007122 GO:0051015
Lele20g0465 939 SMART VILL_6 630 727 IPR007122 GO:0051015
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 603 725 - -
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 369 515 - -
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 28 142 - -
Lele20g0465 939 CDD gelsolin_S4_like 375 472 - -
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 212 336 - -
Lele20g0465 939 CDD gelsolin_S6_like 629 726 - -
Lele20g0465 939 Gene3D Villin headpiece domain 877 939 IPR036886 GO:0003779|GO:0007010
Lele20g0465 939 PANTHER VILLIN 9 929 IPR007122 GO:0051015
Lele20g0465 939 CDD gelsolin_S5_like 504 616 - -
Lele20g0465 939 Gene3D Severin 367 508 IPR029006 -
Lele20g0465 939 Gene3D Severin 623 741 IPR029006 -
Lele20g0465 939 FunFam Gelsolin 507 620 - -
Lele20g0465 939 ProSiteProfiles Headpiece (HP) domain profile. 874 939 IPR003128 GO:0003779|GO:0007010
Lele20g0465 939 PRINTS Gelsolin family signature 398 414 IPR007122 GO:0051015
Lele20g0465 939 PRINTS Gelsolin family signature 681 700 IPR007122 GO:0051015
Lele20g0465 939 PRINTS Gelsolin family signature 652 674 IPR007122 GO:0051015
Lele20g0465 939 PRINTS Gelsolin family signature 456 476 IPR007122 GO:0051015
Lele20g0465 939 PRINTS Gelsolin family signature 310 331 IPR007122 GO:0051015
Lele20g0465 939 PRINTS Gelsolin family signature 423 441 IPR007122 GO:0051015
Lele20g0465 939 FunFam Villin-like 1 877 939 - -
Lele20g0465 939 SMART VHP_1 904 939 IPR003128 GO:0003779|GO:0007010
Lele20g0465 939 MobiDBLite consensus disorder prediction 737 761 - -
Lele20g0465 939 MobiDBLite consensus disorder prediction 844 866 - -
Lele20g0465 939 CDD gelsolin_S3_like 241 330 - -
Lele20g0465 939 CDD gelsolin_S1_like 12 134 - -
Lele20g0465 939 FunFam Villin-4 235 341 - -
Lele20g0465 939 Gene3D Severin 140 234 IPR029006 -
Lele20g0465 939 SUPERFAMILY Actin depolymerizing proteins 141 226 - -
Lele20g0465 939 FunFam Villin-4 372 506 - -
Lele20g0465 939 Pfam Gelsolin repeat 140 203 IPR007123 -
Lele20g0465 939 Pfam Gelsolin repeat 41 119 IPR007123 -
Lele20g0465 939 Pfam Gelsolin repeat 257 321 IPR007123 -
Lele20g0465 939 Pfam Gelsolin repeat 645 720 IPR007123 -
Lele20g0465 939 Pfam Gelsolin repeat 395 469 IPR007123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0465 Lele-ChrLele20 12330286 12337848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0559 17 17723730 17731410 Lele20g0465 20 12330286 12337848 hybridization
Lele18g0954 18 6195079 6202833 Lele20g0465 20 12330286 12337848 hybridization