Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0443 ATGTCCACCGCCGAAACCGCCGAGAACGGCGCCACCACGGCGTTGGAGCCCCAGCTACCTGTCGTTGCATCAGATAATGCCTCCGCCGCCGAACTAGCCACCGCCATCACCACCACCATCAAGGCTGCTGCTGATGCGAACGCCACCCAGGGCAACCCATCGAGTGAGGAGCCCGAGTCCGAGATTCCTAAGACAGATGAAGCTTCCGCCGATCATACCGCTGCTACCACCACTAACACTGCCACTACCACTCCGCCCGAGAAGAGATGGCCGGGTTGGCCTGGGGATTGCGTGTTTCGGCTCATTGTGCCGGTCCTCAAGGTAGGTAGTATTATCGGCCGGAAGGGCGAGGTCATTAAGAAGATGTGTGAGGAGACTCGAGCGCGCATTCGCGTTCTCGATGGTGCCGTGGGCACTTCGGATCGAATTGTACTCATATCAGGGAAGGAAGAACCAGAGGCACCTCTTTCCCCTGCAATGGATGCTGTAATAAGGGTATTCAAGCGTGTCTATGGATTGTCTGAAGCTGATGGTGAGAATAAAGCATCAGGACCTGCTGGTGTTGCGTATGTTTCTGTTCGTCTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCTTCTGCTCGTGTATTATCTGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAGTTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGCCACCTACGAAAGTTCTTGGTTGATCATGGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATGCAACAACTTCACAAGACCGCCAAGCAGATGCATGGGCTGTCAAGACATCCCTGCATAATGCTCAGCAAACTAGCATTAATGCCGATGTTCCTCTTCCCACGAAAAGGGATTCTCTGTTTGTTGAGCGTGAAACTCATTTGGATTCACAACTCCCATCCTCTGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGTGTTCGTTCTTCAACACTTGGTCGTGGTGGGACTCCCATTGTTACCAATGTGATACAAACAATGCAAATACCACTATCCTATGCTGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATCCGCCGTACTAGTGGAGCCATACTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATTAAAGGCACCACAACACAAGTCCAATTGGCCCAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCTCAAGCGGTTATGGTAGGTTAGATACAGGTGGTAGCCTGAGGTCTTCATATGCTGCTCAGTTGGGGGGCAGTACATCCTACTCATCTGCTTCAGTGACCTCACAGCCCTACACAGGCTATGGCTCTTCTGGTTTAGGGGGCTACAGTAGTTTTAGACTCTGA 1479 0.4976 MSTAETAENGATTALEPQLPVVASDNASAAELATAITTTIKAAADANATQGNPSSEEPESEIPKTDEASADHTAATTTNTATTTPPEKRWPGWPGDCVFRLIVPVLKVGSIIGRKGEVIKKMCEETRARIRVLDGAVGTSDRIVLISGKEEPEAPLSPAMDAVIRVFKRVYGLSEADGENKASGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQESTGASARVLSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHGVLPLFEKKTYNATTSQDRQADAWAVKTSLHNAQQTSINADVPLPTKRDSLFVERETHLDSQLPSSAMSLYGQDSSLPGVRSSTLGRGGTPIVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPASSGYGRLDTGGSLRSSYAAQLGGSTSYSSASVTSQPYTGYGSSGLGGYSSFRL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0443 492 MobiDBLite consensus disorder prediction 44 90 - -
Lele20g0443 492 MobiDBLite consensus disorder prediction 44 58 - -
Lele20g0443 492 Gene3D K Homology domain, type 1 364 458 IPR036612 GO:0003723
Lele20g0443 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 188 270 IPR036612 GO:0003723
Lele20g0443 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 362 434 IPR036612 GO:0003723
Lele20g0443 492 MobiDBLite consensus disorder prediction 1 20 - -
Lele20g0443 492 Gene3D - 96 267 - -
Lele20g0443 492 ProSiteProfiles Type-1 KH domain profile. 365 428 - -
Lele20g0443 492 ProSiteProfiles Type-1 KH domain profile. 190 259 - -
Lele20g0443 492 CDD PCBP_like_KH 192 260 - -
Lele20g0443 492 ProSiteProfiles Type-1 KH domain profile. 96 163 - -
Lele20g0443 492 SMART kh_6 364 433 IPR004087 GO:0003676
Lele20g0443 492 SMART kh_6 95 168 IPR004087 GO:0003676
Lele20g0443 492 SMART kh_6 189 264 IPR004087 GO:0003676
Lele20g0443 492 CDD KH-I 367 429 - -
Lele20g0443 492 CDD PCBP_like_KH 98 167 - -
Lele20g0443 492 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 85 451 - -
Lele20g0443 492 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 89 151 IPR036612 GO:0003723
Lele20g0443 492 Pfam KH domain 99 151 IPR004088 GO:0003723
Lele20g0443 492 Pfam KH domain 368 430 IPR004088 GO:0003723
Lele20g0443 492 Pfam KH domain 193 259 IPR004088 GO:0003723
Lele20g0443 492 MobiDBLite consensus disorder prediction 70 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0443 Lele-ChrLele20 12109784 12114442 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0537 17 17541223 17545868 Lele20g0443 20 12109784 12114442 hybridization
Lele18g0975 18 6408906 6413968 Lele20g0443 20 12109784 12114442 hybridization