Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g0537 ATGTCCACCGCCGAAACCACCGAGAACGGCGCCACCACGGCGCCGGAGACCCAGCCGCCTGTCTTTGTATCAGATAATGCCTCCGCCGCCGAACTAGCTGCCGCCACCACCCCCAAGGCTGCTGCTGATGCAAACGCCGCCCAGGGCACCCCATCGAGTGAGGAGCCCGAGTCCGAGATTCCTAAGGCAGACGAAGCTTCCGCCGATCAGACCGCTGCTATCCCCACTAACACTGCCACTGCCACTCCACCCGAGAAGAGATGGCCGGGTTGGCCTGGGGATTGCGTGTTTCGACTCATTGTGCCGGTCCTCAAGGTAGGTAGTATTATCGGCCGGAAGGGCGAGCTAATTAAGAAGATGTGCGAGGAGACTCGAGCACGCATTCGCGTTCTCGATGGTGCCGTGGGCACTCCGGATCGAATTGTACTCATATCAGGTAAGGAAGAGCCAGAGGCACCTCTTTCCCCTGCAATGGATGCTGCAATCAGGGTATTCAAGCGTGTCTATGGATTGTCTGAAGCTGATGGTGAGAATAAAGCATCAGGACCTGCTGGTGTTGCATATGTTTCTGTTCGTCTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCTTCTGCTCGTGTATTGTCTGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAGTTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTGGGAGCAGTAGTTGGCCACCTACGAAAGTTCTTGGTTGATCATAGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATACAACAAACTCACAAGACCGCCAATCGGATGCATGGGCTGACAAGACATCTCTGCATGGTGCTTCACAAACTAGCATTAGTGCTGATGTTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGTTGAGCGTGAGACTCATTTGGATTCACAACTCCCATCCTCTGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGTGTTCGTTCTTCAACACTAGGTCGTGGCGGGACTCCCATGGTTACCAATGTGATACAAACAATGCAAATACCACTATCCTACGCTGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATTCGCCGTACTAGCGGAGCCATACTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATTAAAGGCACCACAACACAAGTCCAATTGGCTCAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCCCAAGCAGTTATGGTAGGTTAGATACAGGTGGTGGTCTGAGGTCTTCATATGCTCAGTTGGGGGGGAGTACATCCTACTCAAATTCTTCAGTGACCTCACAGCCCTACACAGGTTATGGCTCTTCTGGTTTAGGAGGCTACAGTACTTTTAGACTCTAA 1470 0.498 MSTAETTENGATTAPETQPPVFVSDNASAAELAAATTPKAAADANAAQGTPSSEEPESEIPKADEASADQTAAIPTNTATATPPEKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAAIRVFKRVYGLSEADGENKASGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQESTGASARVLSGDEVPFYAAADERIVELQGEALKVLKALGAVVGHLRKFLVDHSVLPLFEKKTYNTTNSQDRQSDAWADKTSLHGASQTSISADVPLSTKRDSLFVERETHLDSQLPSSAMSLYGQDSSLPGVRSSTLGRGGTPMVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPAPSSYGRLDTGGGLRSSYAQLGGSTSYSNSSVTSQPYTGYGSSGLGGYSTFRL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g0537 489 Pfam KH domain 366 428 IPR004088 GO:0003723
Lele17g0537 489 Pfam KH domain 97 149 IPR004088 GO:0003723
Lele17g0537 489 Pfam KH domain 191 255 IPR004088 GO:0003723
Lele17g0537 489 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 359 433 IPR036612 GO:0003723
Lele17g0537 489 SMART kh_6 362 431 IPR004087 GO:0003676
Lele17g0537 489 SMART kh_6 93 166 IPR004087 GO:0003676
Lele17g0537 489 SMART kh_6 187 262 IPR004087 GO:0003676
Lele17g0537 489 CDD PCBP_like_KH 190 258 - -
Lele17g0537 489 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 87 149 IPR036612 GO:0003723
Lele17g0537 489 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 186 268 IPR036612 GO:0003723
Lele17g0537 489 ProSiteProfiles Type-1 KH domain profile. 188 257 - -
Lele17g0537 489 CDD KH-I 365 427 - -
Lele17g0537 489 CDD PCBP_like_KH 96 165 - -
Lele17g0537 489 MobiDBLite consensus disorder prediction 1 88 - -
Lele17g0537 489 MobiDBLite consensus disorder prediction 1 24 - -
Lele17g0537 489 Gene3D K Homology domain, type 1 362 459 IPR036612 GO:0003723
Lele17g0537 489 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 84 453 - -
Lele17g0537 489 ProSiteProfiles Type-1 KH domain profile. 363 426 - -
Lele17g0537 489 ProSiteProfiles Type-1 KH domain profile. 94 161 - -
Lele17g0537 489 Gene3D - 94 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g0537 Lele-ChrLele17 17541223 17545868 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0537 17 17541223 17545868 Lele19g1004 19 6354707 6359398 hybridization
Lele17g0537 17 17541223 17545868 Lele20g0443 20 12109784 12114442 hybridization