Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0975 ATGTCCACCGCCGAAACCACCGAGAACGGCGCCACCACGGCGTCGGAGCCCCAGCCACCTGTCGTGGCATCAGATAATGCCTCCGCCGCCGAACTAGCCACCGCCACCACCACCACCACCACCACCAAGGCTGCTGCTGATGCGAACGCCGCCCAGGGCAACCCATCGAGTGGGGAGCCCGAGTCCGAGATTCCTAAGGCAGATGAAGCTTGCGCCGATCAGACCGCTGCTACCAACACTGCCACTGCCACTACCACTACCACTACCACTCCACCCGAGAAGAGATGGCCGGGTTGGCCTGGGGATTGTGTGTTTCGGCTCATTGTGCCGGTCCTCAAGGTAGGTAGTATTATCGGCCGGAAGGGCGAGGTCATTAAGAAGATGTGTGAGGAGACTCGAGCGCGCATTCGCGTTCTCGATGGTGCCGTGGGCACTCCGGATCGAATTGTACTCATATCAGGGAAGGAAGAACCAGAGGCACCTCTTTCCCCTGCAATGGATGCTGCAATAAGGGTATTCAAGCGTGTCTATGGATTGTCTGAAGCTGATGGTGAGAATAAAGCATCAGGACCTGCTGGTGTTGCGTATGTTTCTGTTCGTCTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAGTACTGGTGCTTCTGCTCGTGTATTATCTGGAGATGAGGTGCCATTTTATGCTGCTGCGGATGAGAGGATTGTAGAGTTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGCCACCTACGAAAGTTCTTGGTTGATCATGGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATGCAACAACATCACAAGACCGCCAAGCAGATGCATGGGCTGTCAAGACATCTCTGCATAATGCTCAGCAAACTAGCATTAATGCTGATGTTCCTCTTTCCACGAAAAGGGATTCTCTGTTTGTTGAACGTGAAACTCATTTGGATTCACAACTCCCATCCTCTGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGTGTTCGTTCTTCAACACTTGGTCGTGGTGGGACTCCCATTGTTACTAATGTGATACAAACAATGCAAATACCACTATCCTATGCTGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATCCGCCGTACTAGTGGAGCCATACTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATTAAAGGCACCACAACACAAGTCCAATTGGCCCAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCTCAAGCGGTTATGGTAGGTTAGATACAGGTGGTAGTCTGAGGTCTTCATATGCTGCTCAGTTGGGGGGCAGTACATCCTACTCATCTTCTTCAGTGACCTCACAGCCCTACACAGGTTATGGCTCTTCTGGTTTAGGGGGCTACAATACTTTTCGACTTTGA 1497 0.4983 MSTAETTENGATTASEPQPPVVASDNASAAELATATTTTTTTKAAADANAAQGNPSSGEPESEIPKADEACADQTAATNTATATTTTTTTPPEKRWPGWPGDCVFRLIVPVLKVGSIIGRKGEVIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAAIRVFKRVYGLSEADGENKASGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQESTGASARVLSGDEVPFYAAADERIVELQGEALKVLKALEAVVGHLRKFLVDHGVLPLFEKKTYNATTSQDRQADAWAVKTSLHNAQQTSINADVPLSTKRDSLFVERETHLDSQLPSSAMSLYGQDSSLPGVRSSTLGRGGTPIVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPASSGYGRLDTGGSLRSSYAAQLGGSTSYSSSSVTSQPYTGYGSSGLGGYNTFRL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0975 498 MobiDBLite consensus disorder prediction 1 65 - -
Lele18g0975 498 CDD PCBP_like_KH 198 266 - -
Lele18g0975 498 Gene3D K Homology domain, type 1 370 464 IPR036612 GO:0003723
Lele18g0975 498 CDD KH-I 373 435 - -
Lele18g0975 498 Pfam KH domain 374 436 IPR004088 GO:0003723
Lele18g0975 498 Pfam KH domain 105 157 IPR004088 GO:0003723
Lele18g0975 498 Pfam KH domain 199 265 IPR004088 GO:0003723
Lele18g0975 498 MobiDBLite consensus disorder prediction 1 22 - -
Lele18g0975 498 CDD PCBP_like_KH 104 173 - -
Lele18g0975 498 ProSiteProfiles Type-1 KH domain profile. 371 434 - -
Lele18g0975 498 ProSiteProfiles Type-1 KH domain profile. 102 169 - -
Lele18g0975 498 ProSiteProfiles Type-1 KH domain profile. 196 265 - -
Lele18g0975 498 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 368 440 IPR036612 GO:0003723
Lele18g0975 498 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 91 461 - -
Lele18g0975 498 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 194 276 IPR036612 GO:0003723
Lele18g0975 498 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 95 157 IPR036612 GO:0003723
Lele18g0975 498 SMART kh_6 101 174 IPR004087 GO:0003676
Lele18g0975 498 SMART kh_6 370 439 IPR004087 GO:0003676
Lele18g0975 498 SMART kh_6 195 270 IPR004087 GO:0003676
Lele18g0975 498 Gene3D - 102 273 - -
Lele18g0975 498 MobiDBLite consensus disorder prediction 77 93 - -
Lele18g0975 498 MobiDBLite consensus disorder prediction 77 97 - -
Lele18g0975 498 MobiDBLite consensus disorder prediction 29 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0975 Lele-ChrLele18 6408906 6413968 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0975 18 6408906 6413968 Lele19g1004 19 6354707 6359398 hybridization
Lele18g0975 18 6408906 6413968 Lele20g0443 20 12109784 12114442 hybridization