Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0978 ATGCGCTCAGGAGGTTGTGCATTACAGCAGACCCTCACATCGGAGGCTGCATCTGTGTTGAAGCATTCTCTGGGCTTGGCTCGCAGGAGGGGCCATGCCCATGTCACTCCACTCCACGTGGCAGCCACCTTGCTCAGCCTTAGAGCCAGCTCCTTCAGAAGGGCTTGTCTCAAATCTCATCCTCATCACCAAACATCTCCGCATTCACATCATCCTCTCCACGGCAGAGCCCTTGAGCTCTGTTTCAATGTGGCTCTCAACAGGCTCCCAACCACACCAGCTCCAGATCTGCTTCACACCCAGCAGTCTTCTCTTTCAAATGCTCTCATTGCTGCTCTCAAAAGAGCTCAGGCTCACCAGAGAAGGGGTTGTATAGAACAACAGAATCAGCAGCCACTTTTGACCATAAAGGTAGAGCTTGAACAGCTTGTTATATCTATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAGGCTGGGTTCTCTAGTACTGCTGTGAAGAGCAGTATAGAGGACTCTTCAGTTTCACCTCCTTGTTCCGTTTTCCAGTGTTACAGTACTTCTGGAGGTATCTTTTCTTCTCCTTGCTCTCCTTCTCCTAGTGAAAACCAGAGGGAAACCATCAATCCCAACAGTTTCGGGCACACCCACTTCTACACTGCTCCTGAGTACTATTTCTCTCCTCAAAAGAGAACCCCAGTGTACCCTATCACTGAACCAGCTTCATCTAAGGAAGACATCAAGTTGGTTTTGCATGTGCTCTTGAGGAAGAAGAAGAGGAACGCTGTGATAGTTGGGGATTCTGTGTCCATCACTGAAGGCCTTGTGGGAGAGTTGATGGGAAGATTAGACAAAGGAGAGGTTCCTGATGAGTTGAAGTCAACCCGTTTCATCAAGTTTCCTCTAGCACCAGTTTCCTTGAGGTTCATGAAGAGAGATGAAGTTGAAATGAACCTCTTGGAGCTGAAAAGAAAGGTGGATTCCACTGCATCAGGAGGAGGTGGTACCATTATTTACATTGGAGATCTGAAATGGACAGAGGAGGCAACTTTCTTTAGTGAAAAAGAGGAGGGAGGAGAAGCATCTGGATATAACCCAGTGGATCATCTAATTGCAGAAATAGGAAAGTTGTTCTCTGACCATGGAAGCTCATCAAGTGCTAAGGTATGGCTGATGGCAACTGCAAGTTACCAAACATACATGAGATGTCAAATGAGGCAGCCTCCTCTTGAGACCCAGTGGTCTTTTCAGGCAGTTCTTGTTCCTTCAGGTGGACTTGGCTTGAGCCTCCATGCTTCCAGTGTTCTTGAGTCAAAAATGACCATTTCCCAGAACTCAGCTCAGATGCTGGAAAAAAAACTCTTCAGTAATAGGGAGGAGCAGGATAAGCTCACTTGCTGTGAAGAATGTGCCTCTAATTATGAAAAGGATGCTCAAATGTTCAAGCCAGGCCAGACCAAATTCTTGCCTTCCTGGCTTCAGTCTCGTAGCATTGAGGCCCATCCGCAGGAGGAATTAACCCAGTTGAGAAGAAAATGGAATAGACTTTGCCTGTTTCTTCACCAAAGCAAGCATTCCCAGAACCACTGGAACAACAGTGTATACAGCAATCACAGTCCAAATGGGAATATTTATCCCTATAATTCTTCATATCCCATGTGGTCAAAGCAAGGAAGTATTTTCCCAGATTCAAGTTGCATATCATTTGCAGACTCTGCTGCTAATTCCACCACTCATAGCTCCAATCTTGTACCTCGATTCCGACACCAACAATCATGCACTATTGAGTTCAATTTTAGCAGTGGAACTCAGAAACAGCAGCAAGCAACAGCAGAAGAACCGAGTTTGGAATCTCTTAAGGGCATGGAAGGTAAAGAAGTAAAGATTACTCTTGCTCTTGGGAATTCCCAATTCGGTGGTTCAGAGCCAAGGGAGGAAAATATAACTACTGATACAACACAGCGAAGAGCTCATGTTTGTAAACTATTGCAGGAGAATGTGCCATGGCAATCTGAAACAATCCCTTCAATAGCAGAGGCTTTGGTTGTTGATTCCCAATCAAAAAGGCAAAACGCAACTTGGTTGGTTTTGAATGGCAACGACTCTGTAGGGAAAATAAGGTTGGCTCGTGCAATTGCCGAATCGTTCTTTGGTTCAGATGATCTGCTTCTTCAAGTGGACGTGAAGAAGGAGACCTTAGCATCTCCATCATCTGAAGTGCTGAGGAGAGCTTTGGAAGCCCATGAAGAACTCGTCGTTTTAATCGAAAACATTAATTTCGCAGACACCGATTTCAAGAAATTCCTCGGAGACATTTATGAAACAGGAAAATTCAGCCAGGCAATATTCATAGTGACGACCGTTGGCTCAACGATAAACGAAGAACAGAATCAGGACTCAGTGATGCAATTAACATTGCAGGTTAGCGAAACCAATCCAAACTTGGAGACACATTGCATTGTGGGTCTAAAGCGAAAAGCAGAATTCGATCTGTTCACCAAAACAAAACACCCGAGAACCGAAGACAAGGAAGTGGAATCGAACAAAAAGAAAGACATCTCAAGAAAGTCAAGCTTCAACACCCTTGATCTGAACATGAAAGCCAATGACGAAGACGACGACAACGACGGCGATGATGAGAGTAGCGGGAGCCCCATTTCAAGCGATTTGACCCGAGAAACCATGCCGGATTCCACAAACCCAAATGGGTTTCTGGAGTCAATCAAGAATCAATTCGAGTTCAATCGAAGTCGAACTCGAGACCGAGAAATGGCAGAGCAATTCTCAACGAGAATCAAAGGGTGCTTTGAAGAACTTCACGGGAAGGAAAAAGTGAGGAATTTCAGTATAGAAGAGAAGGTGATAGAGGAAGTAGTTGGTGGGTGTGGTAGTTTTACTAACAGAGTGTTTGAGAAATGGCTAAAAGACATTTTTCAAAGAAGCTTACAAACAGGAAAGGAGAGAGAGGGTATACGTTTTAGACTTTGTTGGGGTGGAAAAGGTAAAGGAGGGGAAATTAGGGTTTTTGATAGTGGAGAAGGTGGTGGGTTCATGAGTTCATGTCTGCCACAGAGCATCAAAGTTAACTACTTGATGGATTGA 3105 0.4486 MRSGGCALQQTLTSEAASVLKHSLGLARRRGHAHVTPLHVAATLLSLRASSFRRACLKSHPHHQTSPHSHHPLHGRALELCFNVALNRLPTTPAPDLLHTQQSSLSNALIAALKRAQAHQRRGCIEQQNQQPLLTIKVELEQLVISILDDPSVSRVMREAGFSSTAVKSSIEDSSVSPPCSVFQCYSTSGGIFSSPCSPSPSENQRETINPNSFGHTHFYTAPEYYFSPQKRTPVYPITEPASSKEDIKLVLHVLLRKKKRNAVIVGDSVSITEGLVGELMGRLDKGEVPDELKSTRFIKFPLAPVSLRFMKRDEVEMNLLELKRKVDSTASGGGGTIIYIGDLKWTEEATFFSEKEEGGEASGYNPVDHLIAEIGKLFSDHGSSSSAKVWLMATASYQTYMRCQMRQPPLETQWSFQAVLVPSGGLGLSLHASSVLESKMTISQNSAQMLEKKLFSNREEQDKLTCCEECASNYEKDAQMFKPGQTKFLPSWLQSRSIEAHPQEELTQLRRKWNRLCLFLHQSKHSQNHWNNSVYSNHSPNGNIYPYNSSYPMWSKQGSIFPDSSCISFADSAANSTTHSSNLVPRFRHQQSCTIEFNFSSGTQKQQQATAEEPSLESLKGMEGKEVKITLALGNSQFGGSEPREENITTDTTQRRAHVCKLLQENVPWQSETIPSIAEALVVDSQSKRQNATWLVLNGNDSVGKIRLARAIAESFFGSDDLLLQVDVKKETLASPSSEVLRRALEAHEELVVLIENINFADTDFKKFLGDIYETGKFSQAIFIVTTVGSTINEEQNQDSVMQLTLQVSETNPNLETHCIVGLKRKAEFDLFTKTKHPRTEDKEVESNKKKDISRKSSFNTLDLNMKANDEDDDNDGDDESSGSPISSDLTRETMPDSTNPNGFLESIKNQFEFNRSRTRDREMAEQFSTRIKGCFEELHGKEKVRNFSIEEKVIEEVVGGCGSFTNRVFEKWLKDIFQRSLQTGKEREGIRFRLCWGGKGKGGEIRVFDSGEGGGFMSSCLPQSIKVNYLMD 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0978 1034 MobiDBLite consensus disorder prediction 882 909 - -
Lele18g0978 1034 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Lele18g0978 1034 Pfam Clp amino terminal domain, pathogenicity island component 138 173 IPR004176 -
Lele18g0978 1034 Gene3D - 9 175 IPR036628 -
Lele18g0978 1034 Gene3D - 642 850 IPR027417 -
Lele18g0978 1034 Gene3D - 236 424 IPR027417 -
Lele18g0978 1034 MobiDBLite consensus disorder prediction 861 909 - -
Lele18g0978 1034 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 986 - -
Lele18g0978 1034 SUPERFAMILY Double Clp-N motif 12 172 IPR036628 -
Lele18g0978 1034 ProSiteProfiles Clp repeat (R) domain profile. 8 179 IPR004176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0978 Lele-ChrLele18 6458804 6462358 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0978 18 6458804 6462358 Lele19g1009 19 6418733 6422336 hybridization
Lele18g0978 18 6458804 6462358 Lele20g0439 20 12063375 12066858 hybridization