Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele20g0362 ATGAGGGTGATGATGTTGTCAAAAATTGAAGCTAGTAAGAAGAGTGGCGAAAGCTCGAGAGATGGCAAGCTGTTAAAAGAGATTGAAACTATTAGCAAGGCTTTATATTTGGATAAAAGATTTCCGAGGAATACAGTATCTTCTGCTAGTTCTCGATCCAAGTCTGCTGGGAAATCTCACTTACCTGACCCCAGATCGAAGCCGGCAGCTAGTAATGAAGATCCTTCACGCAAGGATAAGAAGTCCATATGGAATTGGAGACCGTTAAAGGCCTTTTCCCATATCCGCAATCGGAGGTTTGACTGTGGTTTTTCTCTCCAAGTCCATTTGATTGAAAAGTTACCTTCAACTTTTAATGGTTCTAGCCTTAGTGTATCCTGGAAGAGGCGGGATGGGGTTTTGGTGACCCGTCCAGCCAAAGTAGTTGAAGGCTTGGCGGAATTTGAAGAGAAATTGACCTACACTTGCTCCGTGTATGGCAGTAGGAGTGGACCTCACCATTCAGCTAAATATGAAGCTAAGCATTTTTTACTCTATGCTTCTATTCTTAGTGCGCCAGAACTCGATTTGGGGAAGCATAGGGTAGACCTCACAAGGTTGCTTCCTCTTACACTGGAAGAACTGGGGGATGAGAAGAACTCTGGGAAGTGGACTACAAGTTTTAGATTGTCTGGAGTTGCCAGGGGTGCTGTAATGAATGTCAGTTTTGGGTATGAGGTGGTTCGTGATAACAGTAATGCTACCAAGGACAACCATAATGTTCCTAATGCTTTGACTTCAAGGCGAGTTGGAAGTGTGCCAAGTTTTACCAAGCAGTATTCTCCTCGAACTATAGATGAGGTAAAGGATCTTCATGAGGTTTTGCCCACATCAAGGTCGGCACTGGCCAGCTCAATAGACATTCTATATCAGAAATTTGATGAAGAAAAGACAAATAGTCCAGTTCATGATGAAACTGAACTGGATTTGTGCTCTGAGAATCTTGAGCAGATCAAACCAAATGAATCTCATTCGTCTGATTCTGGGAAAGAAAAATCTGAAGAGTGTGTTAGCAGTGATGAAAAATGCAGCCCAGTTCTTGGCAATCCTGAAATGGAGCCAGTCCAATCTGATGGCTATGTTAATGAAAACAAGGAAGAGTGCCAAGATAGATTTTCTGTTGTTGATCAAGGCATAGAATCGTCATCAAATGAACCTATTAACTTAGAGGCATCCACCACTGAGGCTCCTGATTCTGATGTTGATACCCATGGTACTGCTGATATCAATTTACATTCTGATGTTGATACCCATGATACTGCTGGTATCCATTTACATTCTGATGTTGATACCCATGATACTGCTGGTATTAACTTAGAGGCATCCACCACTGAGGCTCCTGATTCTGATGTTGATACCCATGGTACTGCTGATATCAATTTACATTCTGATGTTGATACCCATGGTACTGCTGATATCAATTTACATTCTGATGTTGATACCCATGATACTGCTGGTATCCATTTACATTCTGATGTTGATACCCGTGATACTGCTGGTATCCAGTTATCTGCTGAATATGCTATTACATGTGATTCCTTGGGTGGGGAAAATGATGATTCTAATGAGAAGGCTACACCAAACAAATTCACTTCTGAAGATGATGACTTTATCACCAAAGAGCTGCTCATGCAAGAATTAGAATTAGCTTTAAATAGTATCTCAGATTTGGAGACAGCTGCACTGGAATCTCCCAAAGATGAGAAATATGTTGAAACCAGATCTGAATATAAAATGAGAAGATCACATAGCTTGGATGATGTTACAGAATCAGTCGCCAGTGAATTTTTAAGCAGGATAGGTGCTGACCATAGCCCATTTGGTTTGAGTTCTGAAAGCGAAGCTGAGTCCCCAAGAGAGCGCCTTTTAAGGCAATTTGAGAAGGAGGCTCTAGCTGAGGGTTTTTCTTTATTTGATTTTGAAATGGGTGATGATGAAGTTGAAGGTGACTATAATGCTTCTGTTGGATCTGAGCAGTGGAACTTCTCTGAGGGCCCCAGGTCTTCATCACTATTACAAGATCTGCTGCAGGAGGTGCATCCAGTTGAGTCTCGGGAAGTGAGGAGCAAACAGAGGGCTCAGATGGTAGAAGACTTGGAAACAGAAGCCTTGATGCGTGAGTGGGGTTTGAATGAGGATGCCTTTAAGCATTCGCCACCGAAAGACCCTGCTGGTTTTGGAAGTCCCATTCACTCATCACTCGAATACCCTTTTACTTTGCCTCCTCTTGCAGAAGGTGTAGGTCCTTTTCTTCAGACAAAGGATGGGGGATTTTTACGAACTATGGATCCCACACTTTTCAGGAATGCTAGAAGTGGCGGAAGCTTGATTATGCAAGTATCCAATCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGTGTAATGGAGATTTTGCAGCGTTTGGCTTCATTGGGAATTGAAAAGCTCTCAATGCAGGCAAATAAGTTAATGCCTCTGGAGGATATCACAGGGAAGACAATGCAGCAAGTGGCATGGGAAGCTATGCCTCTTTTGGAGGGAACAGAGAGGCAATTTCTGTCGCAGCATAATTTGGTGGCAGGGCAAGATACTTGTTCTGTGCAAAGTGGCTTGAAAGGATCATCATTGGGACCAAAGACTACAAAGTCTAATACGAGTTCATTAGGAAATCAAACAAGTTCAGAATTCGCTTCATTGGAAGATCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGTTTGAGAATACAGTCTGGGATGTCCGATCAGGATGCACCACCGAACATCATTGCACAATCCATTGGGGATGTTTCAGCTCTCCAGGGCAAGGGGGCTGATATTAGTGGGTCTCTTGGCCTTGATGGAACCGCAGGTTTGCAGTTGTTGGATCTAAAAGACAGCAGTGATGGTGTTGAATCCGGCGATGAGATAATGGGCCTATCATTAACCCTGGATGAATGGATGAGGTTGGATTCTGGTGAGATCGATAATATGGAGAATATCAGTGATCATACTTCCAAACTTCTTGCTGCGCATCATGCTAACACTTTTGACTTCATTCGTGGGACCTCCAAGGGAGAGAAGAAAAGAGGCAAAGGCCATGGCAGAAAGTGTGGTTTGTTGGGAAATAATTTTACAGTAGCTTTGATGGTGCAACTGCGTGATCCTCTAAGAGACTATGAGCCTGTTGGAACCCCAATGCTTGCTCTGATACAAGTGGAGAGGGTGTTTGTCCCACCAAAGCCAAGAATTTTCTGCAACGTGTCCGAGATAAGGAACAATAATGATGGAGACGATGAGCGTGAAACTAGTGCTAAGTTGGAGTCAAAGGATGACAAGAAAGAAGAGGAAACAACCTCTGAAGAGGAGAGCATTCCTCAGTTTAAAATAACTGAAGTCCATGTTGCTGGTCTGTCAGCCGAACCCGAGCCTCGCAAAAAGAAGCTTTGGGGAACTTCAACCAATGAAAAGTCTGGCTCCCGTTGGTTACTTGCCAATGGAATGGGGAAGAGCAATAAGCATCCAATAATGAAGTCAAAAGTTGCATCAAAATCTGGTGCTACAGCGACAACAAAAGTGCAACCCGGTGATACATTATGGAGCATATCATCTCGTGTTTATGGTTCAGGATCAAAATGGAAGGAATTGGCAGCTGTAAATCCACATATCAGAAACCCCAACGTCATTATATCAGATAAAACCATTAGATTGAAGTGA 3747 0.4307 MRVMMLSKIEASKKSGESSRDGKLLKEIETISKALYLDKRFPRNTVSSASSRSKSAGKSHLPDPRSKPAASNEDPSRKDKKSIWNWRPLKAFSHIRNRRFDCGFSLQVHLIEKLPSTFNGSSLSVSWKRRDGVLVTRPAKVVEGLAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASILSAPELDLGKHRVDLTRLLPLTLEELGDEKNSGKWTTSFRLSGVARGAVMNVSFGYEVVRDNSNATKDNHNVPNALTSRRVGSVPSFTKQYSPRTIDEVKDLHEVLPTSRSALASSIDILYQKFDEEKTNSPVHDETELDLCSENLEQIKPNESHSSDSGKEKSEECVSSDEKCSPVLGNPEMEPVQSDGYVNENKEECQDRFSVVDQGIESSSNEPINLEASTTEAPDSDVDTHGTADINLHSDVDTHDTAGIHLHSDVDTHDTAGINLEASTTEAPDSDVDTHGTADINLHSDVDTHGTADINLHSDVDTHDTAGIHLHSDVDTRDTAGIQLSAEYAITCDSLGGENDDSNEKATPNKFTSEDDDFITKELLMQELELALNSISDLETAALESPKDEKYVETRSEYKMRRSHSLDDVTESVASEFLSRIGADHSPFGLSSESEAESPRERLLRQFEKEALAEGFSLFDFEMGDDEVEGDYNASVGSEQWNFSEGPRSSSLLQDLLQEVHPVESREVRSKQRAQMVEDLETEALMREWGLNEDAFKHSPPKDPAGFGSPIHSSLEYPFTLPPLAEGVGPFLQTKDGGFLRTMDPTLFRNARSGGSLIMQVSNPVVVPAEMGSGVMEILQRLASLGIEKLSMQANKLMPLEDITGKTMQQVAWEAMPLLEGTERQFLSQHNLVAGQDTCSVQSGLKGSSLGPKTTKSNTSSLGNQTSSEFASLEDLAPLAMDKIEALSMEGLRIQSGMSDQDAPPNIIAQSIGDVSALQGKGADISGSLGLDGTAGLQLLDLKDSSDGVESGDEIMGLSLTLDEWMRLDSGEIDNMENISDHTSKLLAAHHANTFDFIRGTSKGEKKRGKGHGRKCGLLGNNFTVALMVQLRDPLRDYEPVGTPMLALIQVERVFVPPKPRIFCNVSEIRNNNDGDDERETSAKLESKDDKKEEETTSEEESIPQFKITEVHVAGLSAEPEPRKKKLWGTSTNEKSGSRWLLANGMGKSNKHPIMKSKVASKSGATATTKVQPGDTLWSISSRVYGSGSKWKELAAVNPHIRNPNVIISDKTIRLK 1248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele20g0362 1248 Coils Coil 553 573 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 1100 1137 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 1 23 - -
Lele20g0362 1248 ProSiteProfiles C2 NT-type domain profile. 92 240 IPR019448 -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 390 413 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 526 545 - -
Lele20g0362 1248 CDD LysM 1202 1239 IPR018392 -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 329 371 - -
Lele20g0362 1248 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 5 1241 IPR039614 -
Lele20g0362 1248 SMART LysM_2 1200 1248 IPR018392 -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 875 899 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 390 425 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 44 79 - -
Lele20g0362 1248 Pfam LysM domain 1202 1246 IPR018392 -
Lele20g0362 1248 Gene3D LysM domain 1190 1248 IPR036779 -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 336 352 - -
Lele20g0362 1248 ProSiteProfiles LysM domain profile. 1199 1247 IPR018392 -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 1103 1133 - -
Lele20g0362 1248 MobiDBLite consensus disorder prediction 530 545 - -
Lele20g0362 1248 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 97 246 IPR019448 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele20g0362 Lele-ChrLele20 11400607 11404702 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0454 17 16832278 16835840 Lele20g0362 20 11400607 11404702 hybridization
Lele18g1056 18 7154553 7160737 Lele20g0362 20 11400607 11404702 hybridization