Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g1056 ATGGATAACAAGCTTTGCTCAGACGTTGCGAACACTCTAATGAGGGTGATGATGTTGTCAAAAATTGAAGCTGGTAAGAAGAGTGGCGAAAGCTCGAGAGATGGCAAGCTGTTAAAAGAGATTGAAACTATTAGCAAGGCTTTATATTTGGATAAAAGATTTCCGAGGAATACAGTGTCTTCTGCTAGTTCTCGATCCAAGTCTGCCGGGAAATCTCACTTACCTGACCCCAGATCGAAGCCTGCAGCTAGTAAGGAAGATCCTTCACGCAAGGATAAGAAGTCCATATGGAATTGGAGACCGTTAAAGGCCTTTTCCCATATCCGCAATCGGAGGTTTGACTGTAGTTTTTCCCTCCAAGTCCATTTGATTGAAAAGTTACCTTCAACTTTTAATGGTTCTAGCCTTAGTGTATCCTGGAAGAGGCGGGATGGGCTTTTGGTGACCCGTCCAGCCAAGGTAGTTGAAGGCTTGGCGGAATTTGAAGAGAAATTGACCTACACTTGCTCAGTGTATGGCAGTAGGAGTGGACCTCACCATTCAGCTAAATATGAAGCTAAGCATTTTTTACTCTATGCTTCTATTCTTAGTGCGCCAGAACTCGATTTGGGGAAGCATAGGGTAGACCTCACAAGGTTGCTTCCTCTTACACTGGAAGAACTGGGGGATGAGAAGAACTCAGGGAAGTGGACTACAAGTTTTAGATTGTCTGGAGTTGCCAGGGGTGCTGTAATGAATGTCAGTTTTGGGTATGAGGTGGTTGGTGATAACAGTAATGCTACCAAGGACAACCATAATGTTCCTAATGCTTTGACTTCAAGGCGAGTTGGAAGTGTGCCAAGTTTTACCAAGCAGTATTCTCCTCGAACTATAGATGAGGTAAAGGATCTTCATGAGGTTTTGCCCACGTCAAGGTCGGCACTGGCCAGCTCAATAGACATTCTATATCAGAAATTTGATGAAGAAAAGACAAATAGTCCAGTGCATGACGAAACTGAACTGGATTTGTGTGAGAATCTTGAGCAAATCAAACCAAATGAATCTCATTCGACTGATTCTGGGAAAGAAAAATCTGAAGAGTGTGTTGGCAGTGATGAAAAATGCAGCCCAGTTCCTGGCAATCCTGAAATGGAGCCAGTCCAATCTGATGGTTATGTTAATGAAAACACCGAAGAGTGCCAAGATAGAATTTCTGTTGTTGATCAAGGCATAGAATCATCATCAAATGAACCTCTTAACTTAGAGGCATCCACCACTAAGGCTCCTGATTCTGATGTCGATACCCATGATACTGCTGATGTCCATTTACATTCTGATGTCGATACCCATGATACTGCTGATATCCATTTACATTCTGATGTCGATACCCATGATACTGCTGGTATCCAGTTATCTCCTGAATATGCTATTACATGTGATTCCTTGGGTGAGGAAAATGATGATTCTAAGGAGAAGGCTGCACCAAACAAATTCACTTCTGAAGACGATGACTTTATCACCAAAGAGCTGCTCATGCAAGAATTAGAATTGGCTTTAAATAGTATCTCAGATTTGGAGACAGCTGCACTAGAATCTCCCAAAGATGATAAATATGTCGAAACCAGATCTGAATATAAAATGAGAAGATCACATAGCTTGGATGATGTTACAGAATCAGTTGCCAGTGAATTTTTAAGCAGGATAGGTGCTGACCATAGCCCATTTGGTTTGAGTTCTGAAAGCGAAGCTGAGTCCCCAAGAGAGCGACTTTTAAGGCAATTTGAGAAGGAGGCTCTAGCTGAGGGTTTTTCTTTATTTGATTTTGAAATTGGTGATGATGAAGTTGAAGGTGACTATAATGCTCCTGTTGGATCTGAGCAGTGGAACTTCTCTGAGGGCCCCAGGTCTTCATCACTGTTACAAGATCTGCTGCAGGAGGTGCATCCAGTTGAGTCTCGGGAAGTGAGGAGCAAACAGAGGGCTCAAATGGTAGAAGACTTGGAAACAGAAGCCTTGATGCGTGAGTGGGGTTTGAATGAGGATGCCTTTAAGCATTCGCCACCGAAAGACCCTGCTGGGTTTGGAAGTCCCATTCACTCATCGCCTGAAGACCCTCTTAGTTTGCCTCCTCTTGCAGAAGGGTTAGGTCCTCTTCTTCAGACAAAGGATGGGGGATTTTTACGAACTATGGATCCCACACTTTTCAGGAATGCTAAAAGTGGTGGAAGCTTGATTATGCAAGTATCCAATCCTGTTGTGGTACCTGCAGAAATGGGTTCTGGTGTAATGGAGATTTTGCAGCGTTTGGCTTCATTGGGAATTGAAAAGCTCTCAATGCAGGCTAATAAGTTAATGCCTCTGGCGGATATCACAGGGAAGACAATGCAGCAAGTGGCATGGGAAGCTATGCCTCTTTTGGAGGGAACAGAGAGGCAATTTCTGTCGCAGCATGATTTGGTGGCAGGGCAAGATACTTGTTCTGTGCAAAGTAGCTTGAAAGGATCATCATCGGGACCAAAGACTACAAAGTCTAATACGAGTTCATTAGGAAATCAAACAAGTTCAGAATTCGCTTCATTGGAAGATCTTGCTCCATTGGCTATGGATAAAATTGAAGCACTTTCAATGGAGGGGTTGAGAATACAGTCTGGGATGTCCGAACAGGATGCACCACCGAACATCATTGCACAATCCATTGGGGATGTTTCAGCTCTTCAGGGCAAGGGGGCTGATATTAGTGGGTCTCTCGGCCTTGATGGAACTGCAGGTTTGCAGTTGTTGGATCTAAAAGACAGCAGTGATGGTGTTGAATCCGGTGATGAGATAATGGGCCTATCATTAACCCTGGATGAATGGATGAGGTTGGATTCTGGTGAGATCGATAATATGGAGAATATCAGTAATCATACTTCCAAACTTCTTGCTGCGCATCATGCTAACACTTTTGACTTCATTCGTGGGACCTCCAAGGGAGAGAAGAAAAGAGGCAAAGGCCATGGCAGAAAGTGTGGTTTGTTGGGAAATAATTTTACAGTAGCTTTGATGGTGCAACTGCGTGATCCTCTAAGAGACTTTGAGCCTGTTGGAACGCCCATGCTTGCTCTGATACAAGTGGAGAGGGTGTTTGTCCCACCAAAGCCAAGAATTTTCTGCAATGTCTCCGAGATAAGGAACAATATTGATGGAGCCGATGAGCGTGAAACTAGTGCTAAGTTGGAGTCAAAGGATGACAAGAAAGAAGAGGAAACAACCTCTGAAGAGGAGAGCATTCCTCAGTTTAAAATAACTGAAGTCCATGTTGCTGGTCTGTCAGCCGAACCCGAGCCTCGCAAAAAGAAGCTTTGGGGAACTTCAACCAATGAAAAGTCTGGCTCCCGTTGGTTACTTGCCAATGGAATGGGGAAGAATAATAAGCATCCAATAATGAAGTCAAAAGTTGCATCAAAATCTGGTGCTACAGCAACAACAAAAGTGCAACCTGGTGATACATTGTGGAGCATATCATCTCGTGTTTATGGTTCAGGATCAAAATGGAAGGAATTGGCAGCTGTAAATCCACATATCAGAAACCCCAACGTCATTATATCAGATAAAACCATTAGATTGAAGTGA 3591 0.435 MDNKLCSDVANTLMRVMMLSKIEAGKKSGESSRDGKLLKEIETISKALYLDKRFPRNTVSSASSRSKSAGKSHLPDPRSKPAASKEDPSRKDKKSIWNWRPLKAFSHIRNRRFDCSFSLQVHLIEKLPSTFNGSSLSVSWKRRDGLLVTRPAKVVEGLAEFEEKLTYTCSVYGSRSGPHHSAKYEAKHFLLYASILSAPELDLGKHRVDLTRLLPLTLEELGDEKNSGKWTTSFRLSGVARGAVMNVSFGYEVVGDNSNATKDNHNVPNALTSRRVGSVPSFTKQYSPRTIDEVKDLHEVLPTSRSALASSIDILYQKFDEEKTNSPVHDETELDLCENLEQIKPNESHSTDSGKEKSEECVGSDEKCSPVPGNPEMEPVQSDGYVNENTEECQDRISVVDQGIESSSNEPLNLEASTTKAPDSDVDTHDTADVHLHSDVDTHDTADIHLHSDVDTHDTAGIQLSPEYAITCDSLGEENDDSKEKAAPNKFTSEDDDFITKELLMQELELALNSISDLETAALESPKDDKYVETRSEYKMRRSHSLDDVTESVASEFLSRIGADHSPFGLSSESEAESPRERLLRQFEKEALAEGFSLFDFEIGDDEVEGDYNAPVGSEQWNFSEGPRSSSLLQDLLQEVHPVESREVRSKQRAQMVEDLETEALMREWGLNEDAFKHSPPKDPAGFGSPIHSSPEDPLSLPPLAEGLGPLLQTKDGGFLRTMDPTLFRNAKSGGSLIMQVSNPVVVPAEMGSGVMEILQRLASLGIEKLSMQANKLMPLADITGKTMQQVAWEAMPLLEGTERQFLSQHDLVAGQDTCSVQSSLKGSSSGPKTTKSNTSSLGNQTSSEFASLEDLAPLAMDKIEALSMEGLRIQSGMSEQDAPPNIIAQSIGDVSALQGKGADISGSLGLDGTAGLQLLDLKDSSDGVESGDEIMGLSLTLDEWMRLDSGEIDNMENISNHTSKLLAAHHANTFDFIRGTSKGEKKRGKGHGRKCGLLGNNFTVALMVQLRDPLRDFEPVGTPMLALIQVERVFVPPKPRIFCNVSEIRNNIDGADERETSAKLESKDDKKEEETTSEEESIPQFKITEVHVAGLSAEPEPRKKKLWGTSTNEKSGSRWLLANGMGKNNKHPIMKSKVASKSGATATTKVQPGDTLWSISSRVYGSGSKWKELAAVNPHIRNPNVIISDKTIRLK 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g1056 1196 MobiDBLite consensus disorder prediction 342 383 - -
Lele18g1056 1196 Coils Coil 501 521 - -
Lele18g1056 1196 Pfam LysM domain 1150 1194 IPR018392 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 1055 1084 - -
Lele18g1056 1196 CDD LysM 1150 1187 IPR018392 -
Lele18g1056 1196 ProSiteProfiles LysM domain profile. 1147 1195 IPR018392 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 471 492 - -
Lele18g1056 1196 SMART LysM_2 1148 1196 IPR018392 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 1055 1081 - -
Lele18g1056 1196 ProSiteProfiles C2 NT-type domain profile. 105 253 IPR019448 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 404 421 - -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 678 697 - -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 476 492 - -
Lele18g1056 1196 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 110 258 IPR019448 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 404 430 - -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 71 92 - -
Lele18g1056 1196 Gene3D LysM domain 1138 1196 IPR036779 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 348 364 - -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 821 846 - -
Lele18g1056 1196 PANTHER PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1 18 1189 IPR039614 -
Lele18g1056 1196 MobiDBLite consensus disorder prediction 57 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g1056 Lele-ChrLele18 7154553 7160737 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g1056 18 7154553 7160737 Lele19g1089 19 7075003 7076364 hybridization
Lele18g1056 18 7154553 7160737 Lele20g0362 20 11400607 11404702 hybridization