Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g1004 ATGTCCACCGCCGAAACCACCGAGAACGGCGCCACCACGGCGTCGGAGACCCAGCCGCCTGTCGTTGTATCAGATAATGCATCCGCCGCCGAACTAGCCACCACCACCACCAAGGCTGGTGCTGATGCGAACGCCGCCCAGGGCACCCCATCTAGCGAGGAGCCCGAGTCCGAGATTCCTAAGGCAGACGAAGCTTCCGCCGATCAGACCGCTGCTATCCCCACTAACACTGCGACTGCCACTCCACCCGAGAAGAGATGGCCTGGCTGGCCTGGGGATTGCGTGTTTCGACTCATTGTGCCGGTCCTCAAGGTAGGTAGTATTATCGGCCGGAAGGGCGAGCTGATTAAGAAGATGTGCGAGGAGACTCGAGCGCGCATTCGCGTTCTCGATGGTGCCGTGGGCACTCCGGATCGAATTGTACTCATATCAGGGAAGGAAGAGCCAGAGGCACCTCTTTCCCCTGCAATGGATGCTGCAATAAGGGTATTCAAGCGTGTCTATGGATTGTCTGAAGCTGATGGTGAGAATAAAGCATCAGGACCTGCTGGTGTTGCATATGTTTCTGTTCGTCTGTTGGTGGCATCAACACAGGCTATCAATTTGATTGGAAAGCAAGGTTCATTAATTAAATCTATACAGGAGAATACTGGTGCTTCTGCTCGTGTATTTTCTGGAGATGAGGTGCCATTTTATGCTGCTGTGGATGAGAGGATTGTAGAGTTGCAGGGAGAAGCCTTGAAGGTCCTTAAGGCTCTGGAAGCAGTAGTTGGCCACCTACGAAAGTTCTTGGTTGATCATAGTGTTCTTCCCCTTTTTGAGAAAAAAACTTACAATGCAACAAACTCACAAGACCGCCAAGCGGATGCATGGGCTGACAAGACATCTCTGCATGGTGCTTCACAAACTAGCATTAGTGCTGATGTTCCTCTTTCAACAAAAAGGGATTCTCTCTTTGTTGAGCGCGAGACTCGTTTGGATTCACAACTCCCATCCTCTGCAATGTCACTCTATGGGCAAGATTCTTCACTTCCTGGTGTTCGTTCTTCAACACTTGGTCGTGGTGGGACTCCCATTGTTACCAATGTAATACAAACAATGCAAATACCACTATCCTACGCTGAGGACATCATTGGGATTCAAGGGACTAATATTGCTTACATTCGCCGTACCAGCGGAGCCATACTGACTGTGCAAGAGAGCAGGGTGCCTGATGAAATTATTGTGGAAATTAAAGGCACCACAACACAAGTCCAATTGGCACAACAGTTGATTCAGGAAGTGATAAGCAATCACAAAGAACCAGCCCCAAGCAGTTATGGTAGGTTAGATACAGGTGGTGGGCTGAGGTCTTCATATGCTCAGTTGGGGGGCAGTACATCCTACTCAAATTCTTCAGTGACCTCACAGCCCTACACAGGTTATGGCTCTTCTGGTTTAGGGGGCTACAGTACTTTTAGACTCTAA 1467 0.4976 MSTAETTENGATTASETQPPVVVSDNASAAELATTTTKAGADANAAQGTPSSEEPESEIPKADEASADQTAAIPTNTATATPPEKRWPGWPGDCVFRLIVPVLKVGSIIGRKGELIKKMCEETRARIRVLDGAVGTPDRIVLISGKEEPEAPLSPAMDAAIRVFKRVYGLSEADGENKASGPAGVAYVSVRLLVASTQAINLIGKQGSLIKSIQENTGASARVFSGDEVPFYAAVDERIVELQGEALKVLKALEAVVGHLRKFLVDHSVLPLFEKKTYNATNSQDRQADAWADKTSLHGASQTSISADVPLSTKRDSLFVERETRLDSQLPSSAMSLYGQDSSLPGVRSSTLGRGGTPIVTNVIQTMQIPLSYAEDIIGIQGTNIAYIRRTSGAILTVQESRVPDEIIVEIKGTTTQVQLAQQLIQEVISNHKEPAPSSYGRLDTGGGLRSSYAQLGGSTSYSNSSVTSQPYTGYGSSGLGGYSTFRL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g1004 488 CDD KH-I 364 426 - -
Lele19g1004 488 CDD PCBP_like_KH 95 164 - -
Lele19g1004 488 Pfam KH domain 190 256 IPR004088 GO:0003723
Lele19g1004 488 Pfam KH domain 365 427 IPR004088 GO:0003723
Lele19g1004 488 Pfam KH domain 96 148 IPR004088 GO:0003723
Lele19g1004 488 MobiDBLite consensus disorder prediction 1 87 - -
Lele19g1004 488 ProSiteProfiles Type-1 KH domain profile. 93 160 - -
Lele19g1004 488 ProSiteProfiles Type-1 KH domain profile. 187 256 - -
Lele19g1004 488 MobiDBLite consensus disorder prediction 1 54 - -
Lele19g1004 488 CDD PCBP_like_KH 189 257 - -
Lele19g1004 488 SMART kh_6 186 261 IPR004087 GO:0003676
Lele19g1004 488 SMART kh_6 361 430 IPR004087 GO:0003676
Lele19g1004 488 SMART kh_6 92 165 IPR004087 GO:0003676
Lele19g1004 488 ProSiteProfiles Type-1 KH domain profile. 362 425 - -
Lele19g1004 488 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 86 148 IPR036612 GO:0003723
Lele19g1004 488 Gene3D - 93 264 - -
Lele19g1004 488 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 359 432 IPR036612 GO:0003723
Lele19g1004 488 Gene3D K Homology domain, type 1 361 458 IPR036612 GO:0003723
Lele19g1004 488 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 185 267 IPR036612 GO:0003723
Lele19g1004 488 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 83 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g1004 Lele-ChrLele19 6354707 6359398 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0537 17 17541223 17545868 Lele19g1004 19 6354707 6359398 hybridization
Lele18g0975 18 6408906 6413968 Lele19g1004 19 6354707 6359398 hybridization