Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0829 ATGGCGAAATTGAAGATTGCCGGCACATGGGCAGGAGTGTTAGAGATTGAACTCGAGACTTGGACGCTGCCCATGTTGAGGGAAGAAATCGCCAAGCGATCCAACTGCGGCGTCGACTCCATCAATTTGATATGTGCCGGAAAAATTTTGAAAGACTGTGATCGCCAAGTGAAATTGAGCCAACTAGGTATCAAAAATAACGCCAGAATTCTTGCGAGTCGTATCAGTGCCGAAGAAGGCAAGGTTTTGATGGCCGAGGAGGAACGCGCTCGCAGATTGTCCCGAGTCAAGGCAGCTGCCACAGCCCTCGCCAAAAGGCATGCTGATGGCTCATTACCTATGGAGGACTTCAACATAGAAGTTGAAGATCAAAGTGGACAAAAAGTGCAGTTAGGTTCTCAGACTGATCAGAGGGCAGTAATGATGGGACTGATGCTTCATGCAAATGGAAAACGTCTTATCAGACAGCAAAATTACAATGATGCTTTAGAAGTGCTCTCTATGGGTGAGTTATATAGCCAATTCACTGTAATTGTGTACAGGCTTCTTCTCATGTTAATGTTTGACAAAGTCGATATTGAAGTTTTCCTTGCTGAAGTATTTGTTGTAAACATGCTTCTTGTATTGAAGCTTGTTGACAATGTTCCAATACTGCAAATAGACATGGTGTGGTGCTACTTCATGATCCGAGACATCAGATGGTTATCAGAGGCTGGAAAGCGTCTTGAAATGGCCAGGGCTGGAATTGAGCGTGCTCATGGAAAGGATTCCCTGCGCGTTAGACTTCTACAGGGAGGTCGCTATCCTGAACTTGCACTGAATATTAATTTCAAGCACCATGTAAATAGGCATTTAAGACTAGAGCTACTTGAAGGGGTGGTGGCTTATCACAGTGTTTTAGTCTTGACTTGTGAGGAAATTGATCTGCAAGTGCCAGACGAAGCCTTATCATTTGTTATGAGCATGGGATTCAAAGAGCGTGATGTAAAAAGAGCATTACGGATGAACAATCAAGACGTAGGAGGTGCCATTGATTTCCTTGAGGAGGAGAAGGCAAAGAAACAGCGAAAACGGGAAGAAGATATAAAGAGAAGAAACGAAATTAGGGAACAAAAGCGTTATGGATTGACACCATTAAAGAAAGCCGTGGATATGCAGAAGTTTAAGGATTTGGTCTCTTTGGGATTTGAGAAGGAACTTGCTGCTGAAGCCCTTCGAAGAAATGAAAATGATTTTGACAAGGCATTGAATGATTTGACAAGCCCGGAAACTAATTCTGCTATGCAGGTTCACATCGAGACAAGGAAAACAAAACGGCAGAGGCAATCAAAAGAGTCTCAAATTGCAAATTTGGTCCGCATGGGGTTTGAAAGATCAAGAGTGGTATCTGCTGTCGAGGCTGGTGGCACTTTGGATCAAATAATGCAAATACTGACTGCGCAACCCGAGGAAGCAAGTTCAACTGATAACCCTGCTAGTTCTTCTGCTCCCTTGTCAGATAACATTGGTTCTAACGTTCCAGAACTAACTGAGGACGTTGAAGGTCTATCAGAAGATCTCAGCAAAGCAGAGGAGCGAGATGTGGAAATGGAAGATGAGCTTTCTGCAGATATAGCAAAAGCTGATGCTTTGACTGACTATGATATCGAAGTTAATATAGAAGGGGAAGCCATAACGGAATATCTGTCTCTGTTGGAGTCAGCAGGCAGCAGCAGTGGGCAAAAGTTGCCTTCTCAGTGA 1740 0.4379 MAKLKIAGTWAGVLEIELETWTLPMLREEIAKRSNCGVDSINLICAGKILKDCDRQVKLSQLGIKNNARILASRISAEEGKVLMAEEERARRLSRVKAAATALAKRHADGSLPMEDFNIEVEDQSGQKVQLGSQTDQRAVMMGLMLHANGKRLIRQQNYNDALEVLSMGELYSQFTVIVYRLLLMLMFDKVDIEVFLAEVFVVNMLLVLKLVDNVPILQIDMVWCYFMIRDIRWLSEAGKRLEMARAGIERAHGKDSLRVRLLQGGRYPELALNINFKHHVNRHLRLELLEGVVAYHSVLVLTCEEIDLQVPDEALSFVMSMGFKERDVKRALRMNNQDVGGAIDFLEEEKAKKQRKREEDIKRRNEIREQKRYGLTPLKKAVDMQKFKDLVSLGFEKELAAEALRRNENDFDKALNDLTSPETNSAMQVHIETRKTKRQRQSKESQIANLVRMGFERSRVVSAVEAGGTLDQIMQILTAQPEEASSTDNPASSSAPLSDNIGSNVPELTEDVEGLSEDLSKAEERDVEMEDELSADIAKADALTDYDIEVNIEGEAITEYLSLLESAGSSSGQKLPSQ 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0829 579 PANTHER NEDD8 ULTIMATE BUSTER-1 BS4 PROTEIN 2 570 IPR039749 -
Lele19g0829 579 Coils Coil 344 364 - -
Lele19g0829 579 SUPERFAMILY UBA-like 304 350 IPR009060 GO:0005515
Lele19g0829 579 MobiDBLite consensus disorder prediction 515 534 - -
Lele19g0829 579 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 382 422 IPR015940 -
Lele19g0829 579 ProSiteProfiles Ubiquitin domain profile. 22 70 IPR000626 GO:0005515
Lele19g0829 579 MobiDBLite consensus disorder prediction 482 506 - -
Lele19g0829 579 Gene3D - 302 362 - -
Lele19g0829 579 SUPERFAMILY Ubiquitin-like 20 70 IPR029071 -
Lele19g0829 579 Gene3D - 441 507 - -
Lele19g0829 579 Coils Coil 506 533 - -
Lele19g0829 579 SMART uba_6 384 421 IPR015940 -
Lele19g0829 579 SMART uba_6 312 349 IPR015940 -
Lele19g0829 579 SMART uba_6 444 480 IPR015940 -
Lele19g0829 579 Gene3D - 9 83 - -
Lele19g0829 579 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 310 350 IPR015940 -
Lele19g0829 579 CDD UBA 391 417 - -
Lele19g0829 579 MobiDBLite consensus disorder prediction 482 534 - -
Lele19g0829 579 Gene3D - 386 422 - -
Lele19g0829 579 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 442 467 IPR015940 -
Lele19g0829 579 SUPERFAMILY UBA-like 379 422 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0829 Lele-ChrLele19 4998806 5002697 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0729 17 18989628 18993496 Lele19g0829 19 4998806 5002697 hybridization
Lele18g0792 18 4962616 4968367 Lele19g0829 19 4998806 5002697 hybridization