Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0604 ATGGCTGCATCTGGCGCTGTACAATGCCAGATGATGGACATGACATACCCAGGGGTTGTTCCAATGCACAAGGTGAATTTTGATGCGAAATCAGAGTATGATATGATCCAGAATTACAAAATTCTTCAGGAAGTATTCAACAGGCTGAAGATTGAGAAGCATATTGAAGTTAACAGGCTTGTTAAAGGCCGACCTTTGGACAATCTAGAATTTCTACAATGGCTGAAACGTTATTGTGACTCTGTTAATGGCGGCATTATGAATGAATATAGTTTTCATGTTGCGCTTTATGTTTTATTAAATCCCTTTTCCCCTTCTAGGAATTATAACCCTGTGGAGCGCAGGAGTAAGTGTGGAAAGACTCTTAAGAGTTCTTCGAAGAGCTCAAAATCACTACAAATGAACATTGTTAATAATTCTGTTTCAGGCAACACACTCGGTCCTGACAGAACCTCTGGGCCCAAGCAACACAGGTCAAGTGGTGAAGCAGGCGTGGCTAATTCTTCAGTAGATATTCAAGCTTTGTCCAACGAGATAACTGATCTCAAACTCTCTGTGGATATCCTGGAAAAAGAAAGATACTTTTACTATGGAAAACTAAGGGACATAGAAATTCTTTGTCAGACTCCACAACTGGTGAATGGACCTATGTCTATAGCAACCAAGAAGATTTTGTATGCTGCTGATGCAAAGGAGTCAGCGCTAGATGAAGCTCAGGATTACCTTAATCAAGCTTTGGAAGCTGCTCAATCTGAAGAAGAAGAAGAAAAAGCAGAAGCAGAAATTAAAGCTTGA 795 0.4025 MAASGAVQCQMMDMTYPGVVPMHKVNFDAKSEYDMIQNYKILQEVFNRLKIEKHIEVNRLVKGRPLDNLEFLQWLKRYCDSVNGGIMNEYSFHVALYVLLNPFSPSRNYNPVERRSKCGKTLKSSSKSSKSLQMNIVNNSVSGNTLGPDRTSGPKQHRSSGEAGVANSSVDIQALSNEITDLKLSVDILEKERYFYYGKLRDIEILCQTPQLVNGPMSIATKKILYAADAKESALDEAQDYLNQALEAAQSEEEEEKAEAEIKA 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0604 264 SUPERFAMILY EB1 dimerisation domain-like 172 230 IPR036133 GO:0008017
Lele19g0604 264 MobiDBLite consensus disorder prediction 122 166 - -
Lele19g0604 264 Pfam EB1-like C-terminal motif 189 227 IPR004953 GO:0008017
Lele19g0604 264 Gene3D - 1 116 IPR036872 -
Lele19g0604 264 PANTHER MICROTUBULE-ASSOCIATED PROTEIN RP/EB FAMILY MEMBER 2 253 IPR027328 GO:0008017
Lele19g0604 264 Gene3D - 170 262 - -
Lele19g0604 264 Coils Coil 228 264 - -
Lele19g0604 264 ProSiteProfiles EB1-C terminal (EB1-C) domain profile. 164 234 IPR004953 GO:0008017
Lele19g0604 264 SUPERFAMILY Calponin-homology domain, CH-domain 4 83 IPR036872 -
Lele19g0604 264 MobiDBLite consensus disorder prediction 110 166 - -
Lele19g0604 264 Coils Coil 172 192 - -
Lele19g0604 264 ProSiteProfiles Calponin homology (CH) domain profile. 1 80 IPR001715 GO:0005515
Lele19g0604 264 FunFam RP/EB family microtubule-associated protein 1 95 - -
Lele19g0604 264 Pfam Calponin homology (CH) domain 4 79 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0604 Lele-ChrLele19 3475681 3478221 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0954 17 20534617 20537445 Lele19g0604 19 3475681 3478221 hybridization
Lele18g0575 18 3402015 3404668 Lele19g0604 19 3475681 3478221 hybridization