Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0600 ATGAGTAATCAGTCAGATTCGAGCTCACTCATCCACCAACTTGGGCGGGATATGTCAATTAACTGTCTCCTTCGTTGCTCAAGGTCTGATTATGGTTCAATTGCCTCTGTGAATCAGAATTTTCGATCTCTTGTTCGAAGTGGAGAACTATATAAGCTCAGGCGGCAGTTTGGTATTATCGAACATTGGGTTTACTTCTCTTGCAATCTCATTCAGTGGGAAGCATTTGATCCAAACAATGGTCGATGGATGTGCTTGCCTAGAATGACTTGTAATGAATGCTTTATGTGTTCAGATAAGGAGTCGCTTGCCGTTGGTACAGAACTTTTGGTGTTTGGCAAGGAAATCATGTCTCCTGTTATTTACAAATACAGCATATTGACAAACTCGTGGTCATCTGCTAAAGAAATGAATACTCCTAGATGCTTATTTGGTTCAGCGAGCCTCGGTGAAATAGCTATACTGGCTGGTGGTTGTGACCCACGAGGCAACATCTTAAGTTCAGCTGAGCTTTATAACTCAGAAACTGGAAATTGGGAAACTCTTCCAAACATGAACAGAGCAAGGAAAATGTGCTCTGGTGTATTTATGGATGGGAAATTTTATGTCATTGGGGGGATCGGAGTAGGCAACACTAGACAGTTGACATCTGGTGAGGAGTTTGATTTGCGGACAAGGAAATGGCGTGAAATACCCAATATGTTCCCTGGTCGATATGGAGGGCCTGGGATAGCTGAGGCACCGGCTGCTGCTGAGGCACCTCCTTTAATTGCAGTTGTAAATAATGTATTGTATGCTGCAGATTATGCTCTACAGGAGGTAAGGAGGTATGATAAAGCCAGGAACTTATGGGTTACCATTGGAAGGCTACCTGAGCGGGCAGCTTCTATGAATGGTTGGGGATTAGCTTTTCGGGCATGTGGAGATAGGTTAATCGTTATTGGTGGGGCTCGGGATTTAAATGTGAGGGCGATTGAAGTTAATGCTTGGGTCCCTGGGGAAGGCGAACCACAGTGGAACCTACTGGCCAGCAGACAGTCAGGGAGCTTTGTGTATAATTGTGCTGTGATGGGATGCTGA 1080 0.4472 MSNQSDSSSLIHQLGRDMSINCLLRCSRSDYGSIASVNQNFRSLVRSGELYKLRRQFGIIEHWVYFSCNLIQWEAFDPNNGRWMCLPRMTCNECFMCSDKESLAVGTELLVFGKEIMSPVIYKYSILTNSWSSAKEMNTPRCLFGSASLGEIAILAGGCDPRGNILSSAELYNSETGNWETLPNMNRARKMCSGVFMDGKFYVIGGIGVGNTRQLTSGEEFDLRTRKWREIPNMFPGRYGGPGIAEAPAAAEAPPLIAVVNNVLYAADYALQEVRRYDKARNLWVTIGRLPERAASMNGWGLAFRACGDRLIVIGGARDLNVRAIEVNAWVPGEGEPQWNLLASRQSGSFVYNCAVMGC 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0600 359 SUPERFAMILY Kelch motif 69 356 IPR015915 GO:0005515
Lele19g0600 359 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 4 359 - -
Lele19g0600 359 Pfam Kelch motif 188 234 IPR006652 GO:0005515
Lele19g0600 359 Pfam Kelch motif 140 186 IPR006652 GO:0005515
Lele19g0600 359 Gene3D - 55 349 IPR015915 GO:0005515
Lele19g0600 359 SMART kelc_smart 108 151 IPR006652 GO:0005515
Lele19g0600 359 SMART kelc_smart 152 199 IPR006652 GO:0005515
Lele19g0600 359 SMART kelc_smart 200 249 IPR006652 GO:0005515
Lele19g0600 359 FunFam F-box/kelch-repeat protein SKIP11 56 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0600 Lele-ChrLele19 3454974 3457553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0600 14 290 Miscellaneous Gene Families AT4G33900 24.606 2.49e-12 65.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g0959 17 20555240 20561798 Lele19g0600 19 3454974 3457553 hybridization
Lele18g0572 18 3387521 3390770 Lele19g0600 19 3454974 3457553 hybridization