Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0572 ATGAACTTATCTGTAGTTAAATCCAACAGATCCCCACCATCAAAAGTAATCAAGCAATTGCGATTACAACTAGAAGTTAGGGGAAGAGAGAGGGAGAATCTAGACCCTTGTGAGGCACATCGCTACCTGGGCTGGGGCGTTCCTTTGCAGACAGAATCGAGACCTGCACGTAGTCCACTCGCTCTCTGTGTAATTTGAATTGATGTTTCATTTCTGTTTGATGGGTTAAGAACTAAGAAACAAGGCTTTTCTTTTATGAGCAGATCAATAATTTCCAACAGAATGTTGGAGGGTCTTTCCTTTCTTGTTGCAAGGGAGTTACCAAGCTCATGTGAGGAAGAGAGCAGATGGATTTACAGTGCTGTTCATGTCATGGAGCTCTCGAACAACAAGCGCAGACTGGAAGATGAAGAACAAATGGTGTTGGGAAAGTCCTGCAAACGTTCAGATGCTCCTGAGGAAGGAGAAACATGGTTGAGAGTGCGTGACCTTTCCCTTTCTCATAATCAAATAAATGACCAAAATCATGCAGGTGATCAGTCAGATTCAAGCTCACTCATCCACCAACTTGGGCGGGATATGTCAATTAGCTGTCTCCTTCGTTGCTCAAGGTCTGATTATGGTTCAATTGCCTCAGTGAATCAGAATTTTCGATCTCTCATTCGAAGTGGAGAACTATATAAGCTCAGGCGGCAGTTTGGTATTATAGAACATTGGGTTTACTTCTCTTGCAATCTCCTTGAATGGGAGGCATTTGATCCCAACAATGGTCGATGGATGCGCTTGCCTAGAATGACTTGTAATGAATGCTTTATGTGTTCAGATAAGGAGTCACTTGCTGTTGGTACAGAACTTTTGGTGTTTGGAAAGGAAATCATGTCTCCTGTTATTTACAAATACAGCATATTGACAAACTCCTGGTCATCTGCTAAAGAAATGAATACTCCTAGATGCTTATTTGGTTCAGCGAGCCTCAGTGAAATAGCTATACTGGCTGGTGGTTGCGACCCACGAGGCAATATCTTAAGTTCAGCTGAGCTTTATAACTCAGAAACTGGAGATTGGGAGACTCTTCCAAACATGAACAGAGCAAGGAAAATGTGCTCTGGTGTATTTATGGATGGGAAATTTTATGTCATTGGGGGGATTGGAGTAGGCAACACAAGACAGTTGACATCTGGTGAGGAGTTTGATTTGCAGACAAGGAAATGGCGTGAAATACCCAATATGTTCCCTGGTCGATATGGAGGGGCTGGGATAGCTGAGGCACCAGCTGCTGCTGAGGCACCTCCTTTAATTGCAGTTGTAAATAATGTATTGTATGCTGCAGATTATGCTCTACAGGAGGTGAGGAGGTATGATAAAGTCAGGAACTTATGGATCACCATTGGAAGGCTTCCTGAGCGAGCAGCTTCAATGAATGGTTGGGGATTAGCTTTTCGGGCATGTGGAGATAGGCTAATTGTTATTGGTGGGCCTCGGGATTTAAATGTGAGGGCGATTGAAGTTAATGCTTGGGTCCCTGGGGAAGGCGAACCGCAGTGGAACCTGCTGGCCAGTAGACAGTCAGGGAGCTTTGTGTATAACTGTGCTGTGATGGGATGCTGA 1608 0.4422 MNLSVVKSNRSPPSKVIKQLRLQLEVRGRERENLDPCEAHRYLGWGVPLQTESRPARSPLALCVIXIDVSFLFDGLRTKKQGFSFMSRSIISNRMLEGLSFLVARELPSSCEEESRWIYSAVHVMELSNNKRRLEDEEQMVLGKSCKRSDAPEEGETWLRVRDLSLSHNQINDQNHAGDQSDSSSLIHQLGRDMSISCLLRCSRSDYGSIASVNQNFRSLIRSGELYKLRRQFGIIEHWVYFSCNLLEWEAFDPNNGRWMRLPRMTCNECFMCSDKESLAVGTELLVFGKEIMSPVIYKYSILTNSWSSAKEMNTPRCLFGSASLSEIAILAGGCDPRGNILSSAELYNSETGDWETLPNMNRARKMCSGVFMDGKFYVIGGIGVGNTRQLTSGEEFDLQTRKWREIPNMFPGRYGGAGIAEAPAAAEAPPLIAVVNNVLYAADYALQEVRRYDKVRNLWITIGRLPERAASMNGWGLAFRACGDRLIVIGGPRDLNVRAIEVNAWVPGEGEPQWNLLASRQSGSFVYNCAVMGC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0572 535 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN-RELATED 176 535 - -
Lele18g0572 535 SMART kelc_smart 328 375 IPR006652 GO:0005515
Lele18g0572 535 SMART kelc_smart 376 424 IPR006652 GO:0005515
Lele18g0572 535 SMART kelc_smart 284 327 IPR006652 GO:0005515
Lele18g0572 535 SUPERFAMILY Kelch motif 245 532 IPR015915 GO:0005515
Lele18g0572 535 Pfam Kelch motif 364 410 IPR006652 GO:0005515
Lele18g0572 535 Pfam Kelch motif 316 362 IPR006652 GO:0005515
Lele18g0572 535 FunFam F-box/kelch-repeat protein SKIP11 232 520 - -
Lele18g0572 535 Gene3D - 231 520 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0572 Lele-ChrLele18 3387521 3390770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0572 190 466 Miscellaneous Gene Families AT4G33900 24.921 9.84e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele18g0572 18 3387521 3390770 Lele19g0600 19 3454974 3457553 hybridization
Lele18g0572 18 3387521 3390770 Lele20g0848 20 15114423 15117767 hybridization