Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0490 ATGAAAGTGATGAGAGACCATCTGGGAACGTTCAAGCTTCTGCAAGAGAAAACGCCTCCAGGATTAGTGGATAAGTTTGGATGGTGCACTTGGGACTCGTTTTATCTCACGGTGGATCCAAAAGGAGTTCGGGAAGGTGTGAGAGGCCTTGCGGAGGGTGGGTGCCCTACAGATTTCGTCCTAATCGACGACGGTTGGCAAAGCTTCTTCCACGACGGAGACAAAGCCGTCGGCGATAGTGGAAGCTTGAATTGTGCAATACCAGGAGAGAAAATTCTGAATAGGCTGACGAGTTTCGAAGAGAATAGCAAGTTTAAGGAGTATTGTAGCAGGAAGAGTCCTAGTGATAGAGGGTTGGGTGCCCTTGTGAGGGATCTGAAGGAGGAGTTTAGGAGCTTAGAGGATGATGTGTATGTGTGGCATGCGTTTTGCGGGGATTGGGGTGGGCTTAGGCCCGAAGTGGCGGGCCTGCCGGAGGCCCATGTGGTTGTTCCGAAGTTGTCGGAACTCGGAAGGAGCGGAGAAGCTGATGAGGGATCAGGCGGTGGACAAGATATTGGAAGTCGGCGTGAGATTCTAGAGATGCTATCAGAGGATTATGGGGGTCGCGTAGAACTTTCCATAGCTTATTACAAAGCCCTCACCGATTCAGTGAAGCAGCACTTCAAAGGCAATGGCATCATCTCTAGCATGCAGCAATGCAACGACTTCATGTTCCTCGGTACCCAAACCATAGCTCTGGGCCGAGTCGGTGATGATTTTTGGTGCATCGACCCTGCGGGAGATCCAAACGGCACGTATTGGCTTCAAGGATGTCACATGGTGCACTGTGCCTATAACAGCTTGTGGATGGGAAATTTCATACACCCTGGTTGGGACATGTTCCAATCCGATCATCCTTGTGCTGAGTTCCATGCTGCTTCACGAGCCATCTCCGATGGTCCTGTTTATGTCAGCGACTCCGTTGGCAGACACAACTTCAAGCTCCTCAACAAGCTAGTCCTCCCTGATGGATCCATTCTCAGAAGCGCTAGTGAGTGCTCCAAGAGAGTGAGTTCCTTTGAGAGTCCTGAAGATGTTGAGTGGAGCAAGGGGATGAGTCCGATATGCGTAAAAGAGGAGGATGTGTTTGCTGTGTACATGATTAAGGACCACGACTTGAAGCTGTTGAAGTGGTCGGAAAGTGTGGAGATTTCCCTGGATCCCTTCCATTATGAGCTCTTGAAGCTTTCTCCGGTGACGTTGTTGTCTGAGAGGTCAATCCAATTCGCTCCGGTTGGATTGGTGAATATGCTAAACTCGGGTGGGGCAATTCAGAGTATGGAATTTGGAAAACATGGGAATGAGGTGAGAATTGGAGGGAGAGGGCATGGGGAGATGAGGGCTTTTGCTTCAGAGAAGCCAGTGAGCTGTAAAGTTGATGGAGTGGCCGTTTTACGAGGATAA 1446 0.5007 MKVMRDHLGTFKLLQEKTPPGLVDKFGWCTWDSFYLTVDPKGVREGVRGLAEGGCPTDFVLIDDGWQSFFHDGDKAVGDSGSLNCAIPGEKILNRLTSFEENSKFKEYCSRKSPSDRGLGALVRDLKEEFRSLEDDVYVWHAFCGDWGGLRPEVAGLPEAHVVVPKLSELGRSGEADEGSGGGQDIGSRREILEMLSEDYGGRVELSIAYYKALTDSVKQHFKGNGIISSMQQCNDFMFLGTQTIALGRVGDDFWCIDPAGDPNGTYWLQGCHMVHCAYNSLWMGNFIHPGWDMFQSDHPCAEFHAASRAISDGPVYVSDSVGRHNFKLLNKLVLPDGSILRSASECSKRVSSFESPEDVEWSKGMSPICVKEEDVFAVYMIKDHDLKLLKWSESVEISLDPFHYELLKLSPVTLLSERSIQFAPVGLVNMLNSGGAIQSMEFGKHGNEVRIGGRGHGEMRAFASEKPVSCKVDGVAVLRG 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0490 481 Gene3D Aldolase class I 11 90 IPR013785 -
Lele19g0490 481 PANTHER - 344 474 IPR008811 -
Lele19g0490 481 Pfam Raffinose synthase or seed imbibition protein Sip1 191 344 IPR008811 -
Lele19g0490 481 Pfam Raffinose synthase or seed imbibition protein Sip1 1 169 IPR008811 -
Lele19g0490 481 Pfam Raffinose synthase or seed imbibition protein Sip1 345 476 IPR008811 -
Lele19g0490 481 SUPERFAMILY (Trans)glycosidases 20 333 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0490 Lele-ChrLele19 2778905 2782317 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele19g0490 1 478 Glycoside Hydrolase AT5G40390 49.288 0.0 538
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1071 17 21212739 21215429 Lele19g0490 19 2778905 2782317 hybridization
Lele18g0470 18 2745961 2749083 Lele19g0490 19 2778905 2782317 hybridization