Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele19g0464 ATGGGTGGATCCATTTCAAAACGGCGTAGTGGGAAGACTAGTTCACATTCTTGGAATTACCCTCCGCCTCCAGCACCCTACGTGCAACAAAGCCAAGATCATTTGCCTTACGGGACTCCATCTCAAACCTATGGTGGTGGTCGTGCACCTGAATCGAAAAAGAAGTTGGAGAGGAAGTATTCAAAGATAGATGACAACTATGTTAGCTTGGATCAGGTAACCGAGGCTCTAGCAGGTGCTGGTTTAGAGTCTTCCAATCTAATTGTTGGTATTGACTTCACAAAGAGCAATGAGTGGACAGGTGCAAGATCATTCCAAAGGAGAAGCCTGCATCATATCGGTCATGAACAAAATCCGTATGAACAGGCAATATCAATCATTGGAAAAACACTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGATTTGGAGATGCATCAACCCATGACCAGGAAGTTTTTAGTTTTTATCCGGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGAGCCGGTACAGGGAATTGGTTCCTGAACTAAAGCTTGCAGGGCCAACATCTTTTGCCCCAATCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTAGTGATAATAGCAGACGGACAGGTGACAAGAAGTGTTGATACTGAGAGAGGGCAGCTAAGCACTCAGGAAAAACAAACTGTTGAAGCTATTGTGAAAGCAAGTCAATATCCCCTGTCAATTATATTAGTTGGAGTTGGAGATGGGCCATGGGACATGATGAAAGAATTTGATGATAACATACCAGCACGGGCCTTTGATAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAACATTGATCGATCCAGAAAAGAAACTGACTTTGCACTTGCTGCGCTGATGGAAATACCATCTCAGTACAAGGCAACACTGGAACTTAATATACTGGGTGCTCGTAGAGGGAAAGCTATAGACAGGGTTCCTCTTCCCCCACCAATGTATGGTGCTGCATCTGTGAACGCCTCAAAACCTTCCCGTTCAAGCAGTTTTCGTCCTAGTGCACCATCTGAGAGACATCATGAGACTGGCACAAATCGTCCTGCAAGTTCTGCTTCTGATAATCATGATTGTCCAATTTGCCTCACTGAACCCAAGAATATGGCCTTTGGTTGCGGACATCAGACTTGCTGTGAGTGCGGACAAGATCTGGAGACATGCCCTATTTGCAGGAGTACCATTGATACTCGAATAAGACTTTATTAG 1281 0.434 MGGSISKRRSGKTSSHSWNYPPPPAPYVQQSQDHLPYGTPSQTYGGGRAPESKKKLERKYSKIDDNYVSLDQVTEALAGAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLSRYRELVPELKLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQLSTQEKQTVEAIVKASQYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNIDRSRKETDFALAALMEIPSQYKATLELNILGARRGKAIDRVPLPPPMYGAASVNASKPSRSSSFRPSAPSERHHETGTNRPASSASDNHDCPICLTEPKNMAFGCGHQTCCECGQDLETCPICRSTIDTRIRLY 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele19g0464 426 SMART VWA_4 84 287 IPR002035 -
Lele19g0464 426 Pfam Copine 109 322 IPR010734 -
Lele19g0464 426 Pfam Zinc finger, C3HC4 type (RING finger) 380 421 - -
Lele19g0464 426 CDD vWA_copine_like 63 313 IPR010734 -
Lele19g0464 426 MobiDBLite consensus disorder prediction 341 380 - -
Lele19g0464 426 SUPERFAMILY RING/U-box 378 422 - -
Lele19g0464 426 MobiDBLite consensus disorder prediction 1 53 - -
Lele19g0464 426 CDD RING-HC_RGLG_plant 383 426 IPR045317 GO:0061630|GO:0070534
Lele19g0464 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 359 426 IPR013083 -
Lele19g0464 426 SUPERFAMILY vWA-like 86 268 IPR036465 -
Lele19g0464 426 ProSiteProfiles Zinc finger RING-type profile. 383 416 IPR001841 -
Lele19g0464 426 PANTHER COPINE FAMILY PROTEIN 1 32 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele19g0464 Lele-ChrLele19 2649033 2651647 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1093 17 21337496 21340129 Lele19g0464 19 2649033 2651647 hybridization
Lele18g0445 18 2610913 2613540 Lele19g0464 19 2649033 2651647 hybridization