Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1093 ATGGGTGGATCCATTTCAAAACGGCGTAGTGGGAGGCAACATTCATATTCAAGGACTAGTTCACATTCTTGGAATTACCCTCCGCCTCCAGCACCCTACATGCAACAAAGCCAAGATCATTTGCCTTACGGGACTCCATCTCAAACCTATGGTGGTGGTCGTGCCCCTGAATCAAAAAAGAGGTTGGAGAGGAAGTATTCAAAGATAGATGACAACTATGTTAGCTTGGACCAGGTAACCGAGGCTCTAGCAGTTGCTGGTTTAGAGTCTTCCAATCTAATTGTTGGTATTGACTTCACAAAGAGCAATGAGTGGACAGGTGCAAGATCATTCCAAAGGAGAAGCCTGCATCATATCGGTCATGAACAAAATCCGTATGAACAGGCAATATCAATCATTGGAAAAACACTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGATTTGGAGATGCATCAACCCATGACCAGGAAGTTTTTAGTTTTTACCCGGATGAGAGATTTTGTCAAGGGTTTGAAGAAGTTTTGAGCCGATACAGGGAATTGGTTCCTGAATTAAAGCTTGCAGGGCCAACATCATTTGCCCCAATCATTGAAATGGCAATCACTATAGTTGAGCAAAGTGGTGGCCAATACCATGTCTTAGTGATAATAGCAGACGGACAGGTGACAAGAAGTGTTGATACTGAGAGAGGGCAGCTAAGCACTCAGGAAAAACAAACTGTTGAAGCTATTGTGAAAGCAAGTCAATATCCCCTGTCAATTATATTAGTTGGAGTTGGAGATGGGCCATGGAACATGATGAAAGAATTTGACGATAACATACCAGCTCGGGCCTTTGATAATTTCCAGTTTGTGAATTTTACTGAAATAATGTCAAAGAACATGGATCGATCCAGAAAAGAAACAGACTTTGCACTTGCTGCGCTAATGGAAATACCATCTCAGTACAAGGCAACATTGGAACTTAATATACTGGGTGCTCGTAGAGGGAAAGCTATAGGCAGGGTTCCTCTTCCCCCACCTATGTATGGTGCTGCATCTGTCAACGCCTCAAAACCTTCCCGTTCAAGCAGTTTTCGTCCTAGTGCACCATCTGAGAGACATCGTGAGACTGGCACAAATCTTCCTGCAAGTTCTGCTTCTGATAATCATGATTGTCCAATTTGCCTCACTGAACCCAAGAATATGGCCTTTGGTTGCGGACATCAGACTTGCTGTGAGTGCGGACAAGATCTGGAGACATGCCCTATTTGCAGGAGTACCATTGATACTCGAATAAGACTTTATTAG 1299 0.4326 MGGSISKRRSGRQHSYSRTSSHSWNYPPPPAPYMQQSQDHLPYGTPSQTYGGGRAPESKKRLERKYSKIDDNYVSLDQVTEALAVAGLESSNLIVGIDFTKSNEWTGARSFQRRSLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCQGFEEVLSRYRELVPELKLAGPTSFAPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTERGQLSTQEKQTVEAIVKASQYPLSIILVGVGDGPWNMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETDFALAALMEIPSQYKATLELNILGARRGKAIGRVPLPPPMYGAASVNASKPSRSSSFRPSAPSERHRETGTNLPASSASDNHDCPICLTEPKNMAFGCGHQTCCECGQDLETCPICRSTIDTRIRLY 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1093 432 CDD vWA_copine_like 69 319 IPR010734 -
Lele17g1093 432 Pfam Copine 115 328 IPR010734 -
Lele17g1093 432 MobiDBLite consensus disorder prediction 1 59 - -
Lele17g1093 432 PANTHER COPINE FAMILY PROTEIN 1 24 409 - -
Lele17g1093 432 SUPERFAMILY RING/U-box 383 428 - -
Lele17g1093 432 MobiDBLite consensus disorder prediction 371 385 - -
Lele17g1093 432 SUPERFAMILY vWA-like 92 274 IPR036465 -
Lele17g1093 432 SMART VWA_4 90 293 IPR002035 -
Lele17g1093 432 MobiDBLite consensus disorder prediction 347 385 - -
Lele17g1093 432 ProSiteProfiles Zinc finger RING-type profile. 389 422 IPR001841 -
Lele17g1093 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 432 IPR013083 -
Lele17g1093 432 CDD RING-HC_RGLG_plant 389 432 IPR045317 GO:0061630|GO:0070534
Lele17g1093 432 Pfam Zinc finger, C3HC4 type (RING finger) 386 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1093 Lele-ChrLele17 21337496 21340129 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1093 17 21337496 21340129 Lele19g0464 19 2649033 2651647 hybridization
Lele17g1093 17 21337496 21340129 Lele20g0986 20 15876415 15879043 hybridization